RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 TREML2Q5T2D2 321 aa22.56■■□□□ 1.2
VIPAS39-209ENST00000556909 ATF7IPQ6VMQ6 1270 aa22.56■■□□□ 1.2
VIPAS39-209ENST00000556909 OSBPL5Q9H0X9 879 aaPredicted RBP22.56■■□□□ 1.2
VIPAS39-209ENST00000556909 RAI14Q9P0K7 980 aa22.56■■□□□ 1.2
VIPAS39-209ENST00000556909 TNPO2O14787 897 aaKnown RBP22.55■■□□□ 1.2
VIPAS39-209ENST00000556909 ADCY3O60266 1144 aa22.55■■□□□ 1.2
VIPAS39-209ENST00000556909 FLT3LGP49771 235 aa22.55■■□□□ 1.2
VIPAS39-209ENST00000556909 UNC93B1Q9H1C4 597 aa22.55■■□□□ 1.2
VIPAS39-209ENST00000556909 SZT2Q5T011 3432 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 BCAR3O75815 825 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 ELNP15502 786 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 G3BP1Q13283 466 aaKnown RBP eCLIP22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 ANKRD13CQ8N6S4 541 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 PROCA1Q8NCQ7 364 aaPredicted RBP22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 U2AF1L4Q8WU68 220 aaKnown RBP22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 DPF3Q92784 378 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 FRAT1Q92837 279 aaPredicted RBP22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 PNMA3Q9UL41 463 aa22.54■■□□□ 1.2
VIPAS39-209ENST00000556909 INHAP05111 366 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 UQCRFS1P1P0C7P4 283 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 IRF5Q13568 498 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 TEX11Q8IYF3 940 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 PXYLP1Q8TE99 480 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 CLUAP1Q96AJ1 413 aa22.53■■□□□ 1.2
VIPAS39-209ENST00000556909 SPP2Q13103 211 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 RRP1BQ14684 758 aaKnown RBP22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 FAM110CQ1W6H9 321 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 CHRDL2Q6WN34 429 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 ZNF280CQ8ND82 737 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 SH3RF3Q8TEJ3 882 aaPredicted RBP22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 LRP2BPQ9P2M1 347 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 ALPK3Q96L96 1907 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 PLXNB2O15031 1838 aa22.52■■□□□ 1.2
VIPAS39-209ENST00000556909 FARP2O94887 1054 aaPredicted RBP22.51■■□□□ 1.19
VIPAS39-209ENST00000556909 CAP2P40123 477 aa22.51■■□□□ 1.19
VIPAS39-209ENST00000556909 HTATIP2Q9BUP3 242 aa22.51■■□□□ 1.19
VIPAS39-209ENST00000556909 TBC1D2Q9BYX2 928 aa22.51■■□□□ 1.19
VIPAS39-209ENST00000556909 SGPL1O95470 568 aa22.5■■□□□ 1.19
VIPAS39-209ENST00000556909 HMGCS2P54868 508 aa22.5■■□□□ 1.19
VIPAS39-209ENST00000556909 COA7Q96BR5 231 aa22.5■■□□□ 1.19
VIPAS39-209ENST00000556909 HERC5Q9UII4 1024 aaKnown RBP22.5■■□□□ 1.19
VIPAS39-209ENST00000556909 TMEM57Q8N5G2 664 aa22.49■■□□□ 1.19
VIPAS39-209ENST00000556909 NOL10Q9BSC4 688 aaKnown RBP22.49■■□□□ 1.19
VIPAS39-209ENST00000556909 GPR108Q9NPR9 543 aa22.49■■□□□ 1.19
VIPAS39-209ENST00000556909 SNRKQ9NRH2 765 aa22.49■■□□□ 1.19
VIPAS39-209ENST00000556909 TAOK2Q9UL54 1235 aa22.49■■□□□ 1.19
VIPAS39-209ENST00000556909 USP17L5A8MUK1 530 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 GCLCP48506 637 aaPredicted RBP22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 POLA2Q14181 598 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 TNNI3KQ59H18 835 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 TTC39AQ5SRH9 613 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 NAA16Q6N069 864 aaPredicted RBP22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 DBNDD2Q9BQY9 259 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 PAK6Q9NQU5 681 aaPredicted RBP22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 AATFQ9NY61 560 aaKnown RBP eCLIP22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 FPGT-TNNI3KV9GXZ4 949 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 MYH1P12882 1939 aa22.48■■□□□ 1.19
VIPAS39-209ENST00000556909 PABPC4Q13310 644 aaKnown RBP eCLIP22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 SH3D19Q5HYK7 790 aa22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 DEFB118Q96PH6 123 aa22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 ASCC2Q9H1I8 757 aaPredicted RBP22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 RBM27Q9P2N5 1060 aaKnown RBP22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 PI4KBQ9UBF8 816 aa22.47■■□□□ 1.19
VIPAS39-209ENST00000556909 BAG3O95817 575 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 PLCG2P16885 1265 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 ZKSCAN2Q63HK3 967 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 ADGRA1Q86SQ6 560 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 DHX36Q9H2U1 1008 aaKnown RBP22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 AS3MTQ9HBK9 375 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 FLT1P17948 1338 aa22.46■■□□□ 1.19
VIPAS39-209ENST00000556909 CYP2E1P05181 493 aaPredicted RBP22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 PPP4CP60510 307 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 OS9Q13438 667 aaPredicted RBP22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 CCDC158Q5M9N0 1113 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 MAPKAPK5Q8IW41 473 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 SSH3Q8TE77 659 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 WDR18Q9BV38 432 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 DNAJC18Q9H819 358 aa22.45■■□□□ 1.18
VIPAS39-209ENST00000556909 TFRCP02786 760 aaKnown RBP22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 MTMR2Q13614 643 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 TGFBRAP1Q8WUH2 860 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 CRISPLD2Q9H0B8 497 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 PRO3102Q9H379 93 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 C1orf115Q9H7X2 142 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 NR2E3Q9Y5X4 410 aa22.44■■□□□ 1.18
VIPAS39-209ENST00000556909 ZBTB7BO15156 539 aaPredicted RBP22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 ASNSP08243 561 aa22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 CAPN2P17655 700 aa22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 JAG1P78504 1218 aa22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 ATP8B2P98198 1209 aa22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 METTL16Q86W50 562 aaKnown RBP22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 DDX60LQ5H9U9 1706 aaKnown RBP22.43■■□□□ 1.18
VIPAS39-209ENST00000556909 SURF6O75683 361 aaKnown RBP22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 HMGCRP04035 888 aa22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 BACE1P56817 501 aa22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 SHROOM1Q2M3G4 852 aaPredicted RBP22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 ZNF512BQ96KM6 892 aaPredicted RBP22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 MORF4L1Q9UBU8 362 aa22.42■■□□□ 1.18
VIPAS39-209ENST00000556909 GJD2Q9UKL4 321 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms