RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 KCNJ14Q9UNX9 436 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 CCDC88AQ3V6T2 1871 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 PDS5AQ29RF7 1337 aaKnown RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 STK36Q9NRP7 1315 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 USP17L12C9JPN9 530 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 USP17L21D6R901 530 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 MARCKSP29966 332 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 SART3Q15020 963 aaKnown RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 SYNE3Q6ZMZ3 975 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 ENAHQ8N8S7 591 aaPredicted RBP11.76□□□□□ -0.53
TMEM260-211ENST00000556648 SHISA4Q96DD7 197 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 UBAC1Q9BSL1 405 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 ANKIB1Q9P2G1 1089 aa11.76□□□□□ -0.53
TMEM260-211ENST00000556648 ERICH2A1L162 156 aa11.75□□□□□ -0.53
TMEM260-211ENST00000556648 GPSM2P81274 684 aa11.75□□□□□ -0.53
TMEM260-211ENST00000556648 SF3A1Q15459 793 aaKnown RBP11.75□□□□□ -0.53
TMEM260-211ENST00000556648 AXDND1Q5T1B0 1012 aaPredicted RBP11.75□□□□□ -0.53
TMEM260-211ENST00000556648 ADALQ6DHV7 355 aa11.75□□□□□ -0.53
TMEM260-211ENST00000556648 KCNG4Q8TDN1 519 aa11.75□□□□□ -0.53
TMEM260-211ENST00000556648 ESR2Q92731 530 aa11.75□□□□□ -0.53
TMEM260-211ENST00000556648 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.75□□□□□ -0.53
TMEM260-211ENST00000556648 A0A1W2PQ27 194 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 A0A1W2PQ64 194 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 A0A1W2PQD8 194 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 NMT2O60551 498 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 KINO60870 393 aaKnown RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 TRIM37O94972 964 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 DDR1Q08345 913 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 PTPAQ15257 358 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 FBXW7Q969H0 707 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 ZSCAN10Q96SZ4 725 aaPredicted RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 MAP3K14Q99558 947 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 QTRT2Q9H974 415 aaKnown RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 DCP1AQ9NPI6 582 aaPredicted RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 hCG_1642624A0A1W2PR95 340 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 PLEKHA8P1O95397 391 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 GNL2Q13823 731 aaKnown RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 DZIP1Q86YF9 867 aaKnown RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 CRACR2BQ8N4Y2 399 aaPredicted RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 FANCBQ8NB91 859 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 SPC24Q8NBT2 197 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 TTC12Q9H892 705 aaPredicted RBP11.74□□□□□ -0.53
TMEM260-211ENST00000556648 MYH6P13533 1939 aa11.74□□□□□ -0.53
TMEM260-211ENST00000556648 BTBD18B2RXH4 712 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 SERPINB2P05120 415 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 PFKFB1P16118 471 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 U2AF2P26368 475 aaKnown RBP eCLIP11.73□□□□□ -0.53
TMEM260-211ENST00000556648 ZNF165P49910 485 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 TRIM29Q14134 588 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 SLC39A14Q15043 492 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 DIXDC1Q155Q3 683 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 FAM47AQ5JRC9 791 aa11.73□□□□□ -0.53
TMEM260-211ENST00000556648 TDRD7Q8NHU6 1098 aaKnown RBP11.73□□□□□ -0.53
TMEM260-211ENST00000556648 CRNKL1Q9BZJ0 848 aaKnown RBP11.73□□□□□ -0.53
TMEM260-211ENST00000556648 CTAGE5O15320 804 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 ZNF500O60304 480 aaPredicted RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 MMP1P03956 469 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 FGRP09769 529 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 USP17L8P0C7I0 530 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 IQCB1Q15051 598 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 STX1AQ16623 288 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 C17orf53Q8N3J3 647 aaPredicted RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 RGS22Q8NE09 1264 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 OXER1Q8TDS5 423 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 SH3RF3Q8TEJ3 882 aaPredicted RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 RPGRQ92834 1020 aaKnown RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 NAP1L5Q96NT1 182 aaPredicted RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 CLIC6Q96NY7 704 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 MTA3Q9BTC8 594 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 XDHP47989 1333 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 NAV1Q8NEY1 1877 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 TOB1P50616 345 aaPredicted RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 FUT2Q10981 343 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 NR5A1Q13285 461 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 CRY2Q49AN0 593 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 IFIT1BQ5T764 474 aaKnown RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 DIS3L2Q8IYB7 885 aaKnown RBP11.72□□□□□ -0.53
TMEM260-211ENST00000556648 TRIM22Q8IYM9 498 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 LEMD3Q9Y2U8 911 aa11.72□□□□□ -0.53
TMEM260-211ENST00000556648 FAM205CA6NFA0 338 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 UFL1O94874 794 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 PKN1Q16512 942 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 SHC4Q6S5L8 630 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 NOSTRINQ8IVI9 506 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 TMTC2Q8N394 836 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 WASF1Q92558 559 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 KCNF1Q9H3M0 494 aa11.71□□□□□ -0.53
TMEM260-211ENST00000556648 ANKRD31Q8N7Z5 1873 aa11.71□□□□□ -0.54
TMEM260-211ENST00000556648 ZNF202O95125 648 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 DEXIO95424 95 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 LDHBP07195 334 aaKnown RBP11.7□□□□□ -0.54
TMEM260-211ENST00000556648 GRIN1Q05586 938 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 KRT27Q7Z3Y8 459 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 PROM2Q8N271 834 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 DYNLL2Q96FJ2 89 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 MCM9Q9NXL9 1143 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 VPS54Q9P1Q0 977 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 CDK5RAP2Q96SN8 1893 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 EP400Q96L91 3159 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms