RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 CRTC2Q53ET0 693 aaPredicted RBP6.66□□□□□ -1.34
ATXN3-239ENST00000556315 PLEKHO1Q53GL0 409 aaPredicted RBP6.66□□□□□ -1.34
ATXN3-239ENST00000556315 SIX5Q8N196 739 aa6.66□□□□□ -1.34
ATXN3-239ENST00000556315 ANKIB1Q9P2G1 1089 aa6.66□□□□□ -1.34
ATXN3-239ENST00000556315 NOVA2Q9UNW9 492 aaKnown RBP6.66□□□□□ -1.34
ATXN3-239ENST00000556315 USP42Q9H9J4 1324 aaKnown RBP6.66□□□□□ -1.34
ATXN3-239ENST00000556315 KDRP35968 1356 aa6.66□□□□□ -1.34
ATXN3-239ENST00000556315 WDR90Q96KV7 1748 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 H0YIN7 160 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 M0R082 166 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 PTCD1O75127 700 aaKnown RBP6.65□□□□□ -1.34
ATXN3-239ENST00000556315 MTHFSP49914 203 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 SPEM2Q0P670 501 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 AMOTQ4VCS5 1084 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 ANKMY2Q8IV38 441 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 MICALL1Q8N3F8 863 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 ZNF417Q8TAU3 575 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 ZNF594Q96JF6 807 aaPredicted RBP6.65□□□□□ -1.34
ATXN3-239ENST00000556315 ZNF587Q96SQ5 575 aaPredicted RBP6.65□□□□□ -1.34
ATXN3-239ENST00000556315 BRD7Q9NPI1 651 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 USTQ9Y2C2 406 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 HCN4Q9Y3Q4 1203 aa6.65□□□□□ -1.34
ATXN3-239ENST00000556315 C21orf2O43822 256 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 ALBP02768 609 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 SERPINB2P05120 415 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 TYRO3Q06418 890 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 PRRT3Q5FWE3 981 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 USPL1Q5W0Q7 1092 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 INTS5Q6P9B9 1019 aaKnown RBP6.64□□□□□ -1.35
ATXN3-239ENST00000556315 C20orf204Q6ZNR8 217 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 C2CD5Q86YS7 1000 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 RETREG2Q8NC44 543 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 FAM200AQ8TCP9 573 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 HSH2DQ96JZ2 352 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 PHACTR1Q9C0D0 580 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 SEMA6BQ9H3T3 888 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 POLKQ9UBT6 870 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 CHMP3Q9Y3E7 222 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 KDM6AO15550 1401 aaPredicted RBP6.64□□□□□ -1.35
ATXN3-239ENST00000556315 NCAPD2Q15021 1401 aa6.64□□□□□ -1.35
ATXN3-239ENST00000556315 NFKBIEO00221 500 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 NID1P14543 1247 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 ADH7P40394 386 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 LBX1P52954 281 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 SEC13P55735 322 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 DPYDQ12882 1025 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 EIF4A2Q14240 407 aaKnown RBP6.63□□□□□ -1.35
ATXN3-239ENST00000556315 NFIXQ14938 502 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 RSPO4Q2I0M5 234 aaPredicted RBP6.63□□□□□ -1.35
ATXN3-239ENST00000556315 STAG2Q8N3U4 1231 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 ZNF280CQ8ND82 737 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 ABHD8Q96I13 439 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 SUSD3Q96L08 255 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 CEP63Q96MT8 703 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 NARFQ9UHQ1 456 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 KCNH4Q9UQ05 1017 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 TOGARAM1Q9Y4F4 1720 aa6.63□□□□□ -1.35
ATXN3-239ENST00000556315 UBR3Q6ZT12 1888 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 CNTNAP1P78357 1384 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 IQCA1LA6NCM1 817 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 TMEM88BA6NKF7 163 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 SFI1A8K8P3 1242 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 MLLT1Q03111 559 aaPredicted RBP6.62□□□□□ -1.35
ATXN3-239ENST00000556315 NKAPLQ5M9Q1 402 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 ZNF530Q6P9A1 599 aaPredicted RBP6.62□□□□□ -1.35
ATXN3-239ENST00000556315 C8orf86Q6ZUL3 223 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 LDHDQ86WU2 507 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 TSEN2Q8NCE0 465 aaKnown RBP6.62□□□□□ -1.35
ATXN3-239ENST00000556315 ZMIZ1Q9ULJ6 1067 aa6.62□□□□□ -1.35
ATXN3-239ENST00000556315 SOS1Q07889 1333 aaPredicted RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 PASKQ96RG2 1323 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 DDNO94850 711 aaPredicted RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 PDE6BP35913 854 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 RGS19P49795 217 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 MAP2K1Q02750 393 aaPredicted RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 SWI5Q1ZZU3 235 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 DEFB115Q30KQ5 88 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 C1orf141Q5JVX7 400 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 RAB44Q7Z6P3 723 aaPredicted RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 DNAJC10Q8IXB1 793 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 GAS2L2Q8NHY3 880 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 ZNF622Q969S3 477 aaKnown RBP eCLIP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 C2orf49Q9BVC5 232 aaPredicted RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 BRIP1Q9BX63 1249 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 MAP2P11137 1827 aaKnown RBP6.61□□□□□ -1.35
ATXN3-239ENST00000556315 TAF1LQ8IZX4 1826 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 C4AP0C0L4 1744 aa6.61□□□□□ -1.35
ATXN3-239ENST00000556315 KIF13BQ9NQT8 1826 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 A0A087WZG4 1122 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 RASSF10A6NK89 507 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 CCDC85CA6NKD9 419 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 FAM229AH3BQW9 127 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 PPP1R12BO60237 982 aaPredicted RBP6.6□□□□□ -1.35
ATXN3-239ENST00000556315 HSPA8P11142 646 aaKnown RBP6.6□□□□□ -1.35
ATXN3-239ENST00000556315 CYP19A1P11511 503 aaPredicted RBP6.6□□□□□ -1.35
ATXN3-239ENST00000556315 PDIA4P13667 645 aaKnown RBP6.6□□□□□ -1.35
ATXN3-239ENST00000556315 TRIM28Q13263 835 aaKnown RBP6.6□□□□□ -1.35
ATXN3-239ENST00000556315 SOGA3Q5TF21 947 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 TMEM164Q5U3C3 297 aa6.6□□□□□ -1.35
ATXN3-239ENST00000556315 ALDH16A1Q8IZ83 802 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms