RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 FANCGO15287 622 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 LRRC14Q15048 493 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 PCNX4Q63HM2 1172 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 LRRN4CLQ8ND94 238 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 C12orf49Q9H741 205 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 SPG7Q9UQ90 795 aa7.85□□□□□ -1.15
SCFD1-217ENST00000555953 BIN1O00499 593 aa7.84□□□□□ -1.15
SCFD1-217ENST00000555953 P4HBP07237 508 aaKnown RBP7.84□□□□□ -1.15
SCFD1-217ENST00000555953 USP17L7P0C7H9 530 aa7.84□□□□□ -1.15
SCFD1-217ENST00000555953 ATP2B2Q01814 1243 aa7.84□□□□□ -1.15
SCFD1-217ENST00000555953 ATG4DQ86TL0 474 aaPredicted RBP7.84□□□□□ -1.15
SCFD1-217ENST00000555953 PI4K2BQ8TCG2 481 aa7.84□□□□□ -1.15
SCFD1-217ENST00000555953 GTF2IRD1Q9UHL9 959 aa7.84□□□□□ -1.15
SCFD1-217ENST00000555953 IGF2BP3O00425 579 aaKnown RBP eCLIP7.83□□□□□ -1.16
SCFD1-217ENST00000555953 C8AP07357 584 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 PTPN11Q06124 597 aaPredicted RBP7.83□□□□□ -1.16
SCFD1-217ENST00000555953 KCNA1Q09470 495 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 INPP5AQ14642 412 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 ANGEL2Q5VTE6 544 aaKnown RBP7.83□□□□□ -1.16
SCFD1-217ENST00000555953 SCARA3Q6AZY7 606 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 ARMCX6Q7L4S7 300 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 SPACA3Q8IXA5 215 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 FAM8A1Q9UBU6 413 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 CYP8B1Q9UNU6 501 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 SNX11Q9Y5W9 270 aa7.83□□□□□ -1.16
SCFD1-217ENST00000555953 EOMESO95936 686 aa7.82□□□□□ -1.16
SCFD1-217ENST00000555953 NKPD1Q17RQ9 610 aa7.82□□□□□ -1.16
SCFD1-217ENST00000555953 LRFN4Q6PJG9 635 aa7.82□□□□□ -1.16
SCFD1-217ENST00000555953 CDC37L1Q7L3B6 337 aa7.82□□□□□ -1.16
SCFD1-217ENST00000555953 ELMO3Q96BJ8 720 aa7.82□□□□□ -1.16
SCFD1-217ENST00000555953 FZD5Q13467 585 aa7.81□□□□□ -1.16
SCFD1-217ENST00000555953 GAL3ST3Q96A11 431 aa7.81□□□□□ -1.16
SCFD1-217ENST00000555953 PRDM7Q9NQW5 492 aa7.81□□□□□ -1.16
SCFD1-217ENST00000555953 PRAMEF27A3QJZ7 478 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 LDHBP07195 334 aaKnown RBP7.8□□□□□ -1.16
SCFD1-217ENST00000555953 JAG1P78504 1218 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 SLC23A3Q6PIS1 610 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-217ENST00000555953 CYFIP1Q7L576 1253 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 KCT2Q8NC54 265 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 ZNF507Q8TCN5 953 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 FAM168AQ92567 244 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 PLPPR2Q96GM1 343 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 FBRSQ9HAH7 460 aa7.8□□□□□ -1.16
SCFD1-217ENST00000555953 LRIG2O94898 1065 aa7.79□□□□□ -1.16
SCFD1-217ENST00000555953 SLITRK5O94991 958 aa7.79□□□□□ -1.16
SCFD1-217ENST00000555953 IKZF1Q13422 519 aa7.79□□□□□ -1.16
SCFD1-217ENST00000555953 ZNF648Q5T619 568 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-217ENST00000555953 SV2BQ7L1I2 683 aa7.79□□□□□ -1.16
SCFD1-217ENST00000555953 ASB11Q8WXH4 323 aa7.79□□□□□ -1.16
SCFD1-217ENST00000555953 PRDM5Q9NQX1 630 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-217ENST00000555953 TTF2Q9UNY4 1162 aaKnown RBP7.79□□□□□ -1.16
SCFD1-217ENST00000555953 GNAT3A8MTJ3 354 aa7.78□□□□□ -1.16
SCFD1-217ENST00000555953 CDK8P49336 464 aa7.78□□□□□ -1.16
SCFD1-217ENST00000555953 SLBPQ14493 270 aaKnown RBP eCLIP7.78□□□□□ -1.16
SCFD1-217ENST00000555953 MAPK8IP1Q9UQF2 711 aa7.78□□□□□ -1.16
SCFD1-217ENST00000555953 PITPNM2Q9BZ72 1349 aa7.78□□□□□ -1.16
SCFD1-217ENST00000555953 CNTNAP4Q9C0A0 1308 aa7.78□□□□□ -1.16
SCFD1-217ENST00000555953 CLCN7P51798 805 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 ZP2Q05996 745 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 NKG7Q16617 165 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 TTBK2Q6IQ55 1244 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 HDXQ7Z353 690 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 WNT10AQ9GZT5 417 aa7.77□□□□□ -1.17
SCFD1-217ENST00000555953 PRR33A8MZF0 331 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 GNA15P30679 374 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 WIPI1Q5MNZ9 446 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-217ENST00000555953 FLAD1Q8NFF5 587 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 FRMD6Q96NE9 622 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 FOXQ1Q9C009 403 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
SCFD1-217ENST00000555953 EIF4BP23588 611 aaKnown RBP7.75□□□□□ -1.17
SCFD1-217ENST00000555953 TMEM40Q8WWA1 233 aa7.75□□□□□ -1.17
SCFD1-217ENST00000555953 MIPEPQ99797 713 aa7.75□□□□□ -1.17
SCFD1-217ENST00000555953 SNCAIPQ9Y6H5 919 aa7.75□□□□□ -1.17
SCFD1-217ENST00000555953 RBAK-RBAKDNI3L0D1 243 aa7.74□□□□□ -1.17
SCFD1-217ENST00000555953 PRPF40AO75400 957 aaKnown RBP7.74□□□□□ -1.17
SCFD1-217ENST00000555953 CAP2P40123 477 aa7.74□□□□□ -1.17
SCFD1-217ENST00000555953 ETF1P62495 437 aaKnown RBP7.74□□□□□ -1.17
SCFD1-217ENST00000555953 HSPA12BQ96MM6 686 aa7.74□□□□□ -1.17
SCFD1-217ENST00000555953 SEMA3GQ9NS98 782 aa7.74□□□□□ -1.17
SCFD1-217ENST00000555953 TPX2Q9ULW0 747 aaKnown RBP7.74□□□□□ -1.17
SCFD1-217ENST00000555953 PCDHB5Q9Y5E4 795 aa7.74□□□□□ -1.17
SCFD1-217ENST00000555953 ARID1BQ8NFD5 2236 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-217ENST00000555953 SEPT6Q14141 434 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 CCDC85BQ15834 202 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-217ENST00000555953 ZNF124Q15973 351 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 SFRP5Q5T4F7 317 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 C22orf34Q6ZV56 151 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 RIN3Q8TB24 985 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 TRAIPQ9BWF2 469 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 ATP13A1Q9HD20 1204 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 CTNND2Q9UQB3 1225 aa7.73□□□□□ -1.17
SCFD1-217ENST00000555953 FAM155AB1AL88 458 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 FARP2O94887 1054 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 ZNF865P0CJ78 1059 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 GRK4P32298 578 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 RPS26P62854 115 aaKnown RBP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 FGD1P98174 961 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 PRAMEF13Q5VWM6 474 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms