RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 RRP1BQ14684 758 aaKnown RBP24.87■■□□□ 1.57
VTI1B-205ENST00000555543 CERS3Q8IU89 383 aa24.87■■□□□ 1.57
VTI1B-205ENST00000555543 DHX36Q9H2U1 1008 aaKnown RBP24.87■■□□□ 1.57
VTI1B-205ENST00000555543 DNAJC18Q9H819 358 aa24.87■■□□□ 1.57
VTI1B-205ENST00000555543 DDX60LQ5H9U9 1706 aaKnown RBP24.86■■□□□ 1.57
VTI1B-205ENST00000555543 CHGBP05060 677 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 SLC4A8Q2Y0W8 1093 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 CCDC84Q86UT8 332 aaPredicted RBP24.86■■□□□ 1.57
VTI1B-205ENST00000555543 OTUD7AQ8TE49 926 aaPredicted RBP24.86■■□□□ 1.57
VTI1B-205ENST00000555543 ABHD8Q96I13 439 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 PICK1Q9NRD5 415 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 PI4KBQ9UBF8 816 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 PHIPQ8WWQ0 1821 aa24.86■■□□□ 1.57
VTI1B-205ENST00000555543 MAGEB6P1A0A0J9YX57 407 aa24.85■■□□□ 1.57
VTI1B-205ENST00000555543 BTBD19C9JJ37 291 aa24.85■■□□□ 1.57
VTI1B-205ENST00000555543 ADD2P35612 726 aa24.85■■□□□ 1.57
VTI1B-205ENST00000555543 USP5P45974 858 aa24.85■■□□□ 1.57
VTI1B-205ENST00000555543 MOGSQ13724 837 aa24.85■■□□□ 1.57
VTI1B-205ENST00000555543 HERC5Q9UII4 1024 aaKnown RBP24.85■■□□□ 1.57
VTI1B-205ENST00000555543 MYH1P12882 1939 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 FKTNO75072 461 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 HDAC1Q13547 482 aaPredicted RBP24.84■■□□□ 1.57
VTI1B-205ENST00000555543 METTL16Q86W50 562 aaKnown RBP24.84■■□□□ 1.57
VTI1B-205ENST00000555543 EXOC6Q8TAG9 804 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 SUPT16HQ9Y5B9 1047 aaKnown RBP24.84■■□□□ 1.57
VTI1B-205ENST00000555543 ZHX2Q9Y6X8 837 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 MYH7P12883 1935 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 ATAD5Q96QE3 1844 aa24.84■■□□□ 1.57
VTI1B-205ENST00000555543 TAF1CQ15572 869 aaPredicted RBP24.83■■□□□ 1.57
VTI1B-205ENST00000555543 CTU1Q7Z7A3 348 aaKnown RBP24.83■■□□□ 1.57
VTI1B-205ENST00000555543 LCORLQ8N3X6 602 aa24.83■■□□□ 1.57
VTI1B-205ENST00000555543 GPATCH3Q96I76 525 aa24.83■■□□□ 1.57
VTI1B-205ENST00000555543 NAV1Q8NEY1 1877 aa24.83■■□□□ 1.56
VTI1B-205ENST00000555543 AFG3L2Q9Y4W6 797 aa24.82■■□□□ 1.56
VTI1B-205ENST00000555543 PTPRFP10586 1907 aa24.81■■□□□ 1.56
VTI1B-205ENST00000555543 CXCL11O14625 94 aa24.81■■□□□ 1.56
VTI1B-205ENST00000555543 CAP2P40123 477 aa24.81■■□□□ 1.56
VTI1B-205ENST00000555543 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.81■■□□□ 1.56
VTI1B-205ENST00000555543 HLA-DOAP06340 250 aa24.8■■□□□ 1.56
VTI1B-205ENST00000555543 JAG1P78504 1218 aa24.8■■□□□ 1.56
VTI1B-205ENST00000555543 AAMPQ13685 434 aa24.8■■□□□ 1.56
VTI1B-205ENST00000555543 SHROOM1Q2M3G4 852 aaPredicted RBP24.8■■□□□ 1.56
VTI1B-205ENST00000555543 FOXP4Q8IVH2 680 aaPredicted RBP24.8■■□□□ 1.56
VTI1B-205ENST00000555543 CRACR2BQ8N4Y2 399 aaPredicted RBP24.8■■□□□ 1.56
VTI1B-205ENST00000555543 CRNKL1Q9BZJ0 848 aaKnown RBP24.8■■□□□ 1.56
VTI1B-205ENST00000555543 ARMT1Q9H993 441 aa24.8■■□□□ 1.56
VTI1B-205ENST00000555543 ZCCHC17Q9NP64 241 aaKnown RBP24.8■■□□□ 1.56
VTI1B-205ENST00000555543 SALL3Q9BXA9 1300 aa24.8■■□□□ 1.56
VTI1B-205ENST00000555543 A0A0G2JLL6 359 aaPredicted RBP24.79■■□□□ 1.56
VTI1B-205ENST00000555543 TRIM75PA6NK02 468 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 MBD4O95243 580 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 PRRT2Q7Z6L0 340 aaPredicted RBP24.79■■□□□ 1.56
VTI1B-205ENST00000555543 ANKRD23Q86SG2 305 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 PI4K2BQ8TCG2 481 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 SDR42E1Q8WUS8 393 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 ZFYVE28Q9HCC9 887 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 TTC41PQ6P2S7 1318 aa24.79■■□□□ 1.56
VTI1B-205ENST00000555543 HTTP42858 3142 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 CAP1Q01518 475 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 EVX2Q03828 476 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 UBE3CQ15386 1083 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 ANKRD45Q5TZF3 282 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 GPAT2Q6NUI2 795 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 GCC1Q96CN9 775 aa24.78■■□□□ 1.56
VTI1B-205ENST00000555543 PDHXO00330 501 aa24.77■■□□□ 1.56
VTI1B-205ENST00000555543 PRKAB2O43741 272 aa24.77■■□□□ 1.56
VTI1B-205ENST00000555543 GDF11O95390 407 aa24.77■■□□□ 1.56
VTI1B-205ENST00000555543 KBTBD3Q8NAB2 608 aa24.77■■□□□ 1.56
VTI1B-205ENST00000555543 TRIM34Q9BYJ4 488 aa24.77■■□□□ 1.56
VTI1B-205ENST00000555543 MX1P20591 662 aa24.76■■□□□ 1.55
VTI1B-205ENST00000555543 PLCD1P51178 756 aa24.76■■□□□ 1.55
VTI1B-205ENST00000555543 CD99L2Q8TCZ2 262 aa24.76■■□□□ 1.55
VTI1B-205ENST00000555543 PUS7LQ9H0K6 701 aaKnown RBP24.76■■□□□ 1.55
VTI1B-205ENST00000555543 EHD4Q9H223 541 aa24.76■■□□□ 1.55
VTI1B-205ENST00000555543 DCP1AQ9NPI6 582 aaPredicted RBP24.76■■□□□ 1.55
VTI1B-205ENST00000555543 TLR2O60603 784 aa24.75■■□□□ 1.55
VTI1B-205ENST00000555543 SP3Q02447 781 aa24.75■■□□□ 1.55
VTI1B-205ENST00000555543 ZSCAN25Q6NSZ9 544 aa24.75■■□□□ 1.55
VTI1B-205ENST00000555543 SERPINB13Q9UIV8 391 aa24.75■■□□□ 1.55
VTI1B-205ENST00000555543 USP17L5A8MUK1 530 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 IGHDP01880 384 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 SPP2Q13103 211 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 GADL1Q6ZQY3 521 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 TTC6Q86TZ1 520 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 MCM9Q9NXL9 1143 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 ADGRA2Q96PE1 1338 aa24.74■■□□□ 1.55
VTI1B-205ENST00000555543 ZSWIM8A7E2V4 1837 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 LOC285556D6RIA3 1793 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 ERC2O15083 957 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 GLRX3O76003 335 aaKnown RBP24.73■■□□□ 1.55
VTI1B-205ENST00000555543 POLR3DP05423 398 aaPredicted RBP24.73■■□□□ 1.55
VTI1B-205ENST00000555543 CYP2D6P10635 497 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 TATDN1Q6P1N9 297 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 FASTKD5Q7L8L6 764 aaKnown RBP24.73■■□□□ 1.55
VTI1B-205ENST00000555543 OTOP1Q7RTM1 612 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 ZNF280CQ8ND82 737 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 ERO1AQ96HE7 468 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 ZBTB21Q9ULJ3 1066 aa24.73■■□□□ 1.55
VTI1B-205ENST00000555543 ASNSP08243 561 aa24.72■■□□□ 1.55
VTI1B-205ENST00000555543 IRX6P78412 446 aaPredicted RBP24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms