RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 DBNDD2Q9BQY9 259 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 KRTAP9-9Q9BYP9 154 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 KRTAP9-4Q9BYQ2 154 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 TTC21AQ8NDW8 1320 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 INSRP06213 1382 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 AATKQ6ZMQ8 1374 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 PNPLA6Q8IY17 1366 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 LINC01387J3KSC0 135 aa8.44□□□□□ -1.06
LINC00643-203ENST00000555518 TTC39BQ5VTQ0 682 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-203ENST00000555518 CEP135Q66GS9 1140 aa8.44□□□□□ -1.06
LINC00643-203ENST00000555518 ETFBKMTQ8IXQ9 262 aa8.44□□□□□ -1.06
LINC00643-203ENST00000555518 GALNT11Q8NCW6 608 aa8.44□□□□□ -1.06
LINC00643-203ENST00000555518 NGDNQ8NEJ9 315 aaKnown RBP8.44□□□□□ -1.06
LINC00643-203ENST00000555518 FAM46AQ96IP4 442 aaKnown RBP8.44□□□□□ -1.06
LINC00643-203ENST00000555518 MYRFLQ96LU7 910 aa8.44□□□□□ -1.06
LINC00643-203ENST00000555518 YTHDC1Q96MU7 727 aaKnown RBP8.44□□□□□ -1.06
LINC00643-203ENST00000555518 BLMP54132 1417 aaPredicted RBP8.44□□□□□ -1.06
LINC00643-203ENST00000555518 TAL1P17542 331 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-203ENST00000555518 ATF3P18847 181 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 FBLN1P23142 703 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 SCNN1AP37088 669 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 TNNT2P45379 298 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-203ENST00000555518 TRIP4Q15650 581 aaPredicted RBP8.43□□□□□ -1.06
LINC00643-203ENST00000555518 ARMC10Q8N2F6 343 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 WNT8BQ93098 351 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 OAS3Q9Y6K5 1087 aaKnown RBP8.43□□□□□ -1.06
LINC00643-203ENST00000555518 PXDNQ92626 1479 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 ALS2Q96Q42 1657 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 PEAK1Q9H792 1746 aa8.43□□□□□ -1.06
LINC00643-203ENST00000555518 MTHFSP49914 203 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 DUOXA2Q1HG44 320 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 BRINP3Q76B58 766 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 CLEC10AQ8IUN9 316 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 FAM9BQ8IZU0 186 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 C7orf69Q9H7B7 122 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 C1orf115Q9H7X2 142 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 POLKQ9UBT6 870 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 NOVA2Q9UNW9 492 aaKnown RBP8.42□□□□□ -1.06
LINC00643-203ENST00000555518 HIF3AQ9Y2N7 669 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 CDK12Q9NYV4 1490 aaPredicted RBP8.42□□□□□ -1.06
LINC00643-203ENST00000555518 SLIT3O75094 1523 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 NFAT5O94916 1531 aa8.42□□□□□ -1.06
LINC00643-203ENST00000555518 MAP2P11137 1827 aaKnown RBP8.42□□□□□ -1.06
LINC00643-203ENST00000555518 FSCN2O14926 492 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 KIF4AO95239 1232 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 MED26O95402 600 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 PTPRAP18433 802 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 SPINK2P20155 84 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 ANKRD34AQ69YU3 496 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 DTX1Q86Y01 620 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 COG3Q96JB2 828 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 LACRTQ9GZZ8 138 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 SEC31BQ9NQW1 1179 aa8.41□□□□□ -1.06
LINC00643-203ENST00000555518 NHSL1Q5SYE7 1610 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 SBNO1A3KN83 1393 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 USP19O94966 1318 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 SART1O43290 800 aaKnown RBP8.4□□□□□ -1.06
LINC00643-203ENST00000555518 WNT11O96014 354 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 CABP4P57796 275 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 ELOAQ14241 798 aaKnown RBP8.4□□□□□ -1.06
LINC00643-203ENST00000555518 TRIM42Q8IWZ5 723 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 DDX17Q92841 729 aaKnown RBP8.4□□□□□ -1.06
LINC00643-203ENST00000555518 FAM83CQ9BQN1 747 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 PBX4Q9BYU1 374 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 ABI2Q9NYB9 513 aaPredicted RBP8.4□□□□□ -1.06
LINC00643-203ENST00000555518 RNF114Q9Y508 228 aa8.4□□□□□ -1.06
LINC00643-203ENST00000555518 CRYBG1Q9Y4K1 1723 aa8.4□□□□□ -1.07
LINC00643-203ENST00000555518 MED1Q15648 1581 aaPredicted RBP8.39□□□□□ -1.07
LINC00643-203ENST00000555518 WISP1O95388 367 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 XPCQ01831 940 aaPredicted RBP8.39□□□□□ -1.07
LINC00643-203ENST00000555518 RRS1Q15050 365 aaKnown RBP8.39□□□□□ -1.07
LINC00643-203ENST00000555518 KIAA1211Q6ZU35 1233 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 KRT28Q7Z3Y7 464 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 ABTB2Q8N961 1025 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 GIMAP7Q8NHV1 300 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 SLAIN2Q9P270 581 aa8.39□□□□□ -1.07
LINC00643-203ENST00000555518 TNS3Q68CZ2 1445 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 RPLP1P05386 114 aaKnown RBP8.38□□□□□ -1.07
LINC00643-203ENST00000555518 ZAP70P43403 619 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 PIP4K2BP78356 416 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 ATP11AP98196 1134 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 OCLNQ16625 522 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.38□□□□□ -1.07
LINC00643-203ENST00000555518 FAM20CQ8IXL6 584 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 PRIMPOLQ96LW4 560 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 ADAM19Q9H013 955 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 OSGEPQ9NPF4 335 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 PHRF1Q9P1Y6 1649 aaKnown RBP8.38□□□□□ -1.07
LINC00643-203ENST00000555518 IQSEC2Q5JU85 1478 aa8.38□□□□□ -1.07
LINC00643-203ENST00000555518 RGPD1P0DJD0 1748 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 AHDC1Q5TGY3 1603 aaPredicted RBP8.37□□□□□ -1.07
LINC00643-203ENST00000555518 MAP3K19Q56UN5 1328 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 ZBED9Q6R2W3 1325 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 NPHP3Q7Z494 1330 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 PRMT3O60678 531 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 HNRNPUQ00839 825 aaKnown RBP eCLIP8.37□□□□□ -1.07
LINC00643-203ENST00000555518 NUTM2GQ5VZR2 741 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 PDE12Q6L8Q7 609 aaKnown RBP8.37□□□□□ -1.07
LINC00643-203ENST00000555518 NCAPG2Q86XI2 1143 aa8.37□□□□□ -1.07
LINC00643-203ENST00000555518 RNF208Q9H0X6 261 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms