RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 C16orf86Q6ZW13 317 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 TBC1D10CQ8IV04 446 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 CRACR2BQ8N4Y2 399 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-210ENST00000553950 ESR2Q92731 530 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 DCPSQ96C86 337 aaKnown RBP17.16■□□□□ 0.34
SHMT2-210ENST00000553950 JAKMIP1Q96N16 626 aaKnown RBP17.16■□□□□ 0.34
SHMT2-210ENST00000553950 NEK1Q96PY6 1258 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 CSRNP1Q96S65 589 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 CYP46A1Q9Y6A2 500 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 ATAD5Q96QE3 1844 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 EGFRP00533 1210 aa17.15■□□□□ 0.34
SHMT2-210ENST00000553950 CASTP20810 708 aaKnown RBP17.15■□□□□ 0.34
SHMT2-210ENST00000553950 ANP32AP39687 249 aaKnown RBP17.15■□□□□ 0.34
SHMT2-210ENST00000553950 FOXP4Q8IVH2 680 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-210ENST00000553950 SULF1Q8IWU6 871 aa17.15■□□□□ 0.34
SHMT2-210ENST00000553950 RASEFQ8IZ41 740 aa17.15■□□□□ 0.34
SHMT2-210ENST00000553950 MTA3Q9BTC8 594 aa17.15■□□□□ 0.34
SHMT2-210ENST00000553950 GREB1LQ9C091 1923 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-210ENST00000553950 FGRP09769 529 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 SART3Q15020 963 aaKnown RBP17.14■□□□□ 0.33
SHMT2-210ENST00000553950 PPP4R3BQ5MIZ7 849 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 MKNK2Q9HBH9 465 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 TOMM22Q9NS69 142 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 DOCK1Q14185 1865 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 PLIN4Q96Q06 1357 aa17.14■□□□□ 0.33
SHMT2-210ENST00000553950 MCM5P33992 734 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 MCM2P49736 904 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 CTDSPL2Q05D32 466 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 RASA3Q14644 834 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 ANKRD1Q15327 319 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 CCDC178Q5BJE1 867 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 DCAF15Q66K64 600 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 RUFY3Q7L099 469 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 NBPF3Q9H094 633 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 ZSWIM6Q9HCJ5 1215 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 TSHZ2Q9NRE2 1034 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHMT2-210ENST00000553950 NEDD4P46934 1319 aa17.13■□□□□ 0.33
SHMT2-210ENST00000553950 CYP2D7A0A087X1C5 515 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 TBC1D12O60347 775 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 CYP2D6P10635 497 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 PLCD1P51178 756 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 GABPAQ06546 454 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 EAPPQ56P03 285 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-210ENST00000553950 STOX1Q6ZVD7 989 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 METTL16Q86W50 562 aaKnown RBP17.12■□□□□ 0.33
SHMT2-210ENST00000553950 IQCA1Q86XH1 822 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 CCDC17Q96LX7 622 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 DEFB129Q9H1M3 183 aa17.12■□□□□ 0.33
SHMT2-210ENST00000553950 ERICH2A1L162 156 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 DDTLA6NHG4 134 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-210ENST00000553950 RPS6KB1P23443 525 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 HIRAP54198 1017 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-210ENST00000553950 ADCK5Q3MIX3 580 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 SUPT20HL1Q3ZLR7 823 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 DHX32Q7L7V1 743 aaKnown RBP17.11■□□□□ 0.33
SHMT2-210ENST00000553950 LDHDQ86WU2 507 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 MB21D2Q8IYB1 491 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-210ENST00000553950 ZNF444Q8N0Y2 327 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-210ENST00000553950 TMEM87BQ96K49 555 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 KIF2CQ99661 725 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 TMEM39BQ9GZU3 492 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 PGAP2Q9UHJ9 254 aa17.11■□□□□ 0.33
SHMT2-210ENST00000553950 MYH4Q9Y623 1939 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 TSPY2A6NKD2 308 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 NF2P35240 595 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 CDK8P49336 464 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 FGD1P98174 961 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 SLC4A8Q2Y0W8 1093 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 RRP12Q5JTH9 1297 aaKnown RBP17.1■□□□□ 0.33
SHMT2-210ENST00000553950 SH3BP5LQ7L8J4 393 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 UBAC1Q9BSL1 405 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 TRPM7Q96QT4 1865 aa17.1■□□□□ 0.33
SHMT2-210ENST00000553950 B4E1Z4 1266 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 RANBP6O60518 1105 aaKnown RBP17.09■□□□□ 0.33
SHMT2-210ENST00000553950 KDM4AO75164 1064 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 NEK4P51957 841 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 KRT26Q7Z3Y9 468 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 ZFPM1Q8IX07 1006 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 UPF3BQ9BZI7 483 aaKnown RBP17.09■□□□□ 0.33
SHMT2-210ENST00000553950 ALDH8A1Q9H2A2 487 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-210ENST00000553950 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-210ENST00000553950 GINM1Q9NU53 330 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 PDRG1Q9NUG6 133 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 TAF6LQ9Y6J9 622 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 ASTN2O75129 1339 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-210ENST00000553950 PAPPA2Q9BXP8 1791 aa17.09■□□□□ 0.33
SHMT2-210ENST00000553950 OTOFQ9HC10 1997 aa17.08■□□□□ 0.33
SHMT2-210ENST00000553950 POTECB2RU33 542 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 PRC1O43663 620 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 TSPY3P0CV98 308 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 TSPY8P0CW00 308 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 BECN1Q14457 450 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 CDC37L1Q7L3B6 337 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 HSCBQ8IWL3 235 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 FBXL16Q8N461 479 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 DYNLL2Q96FJ2 89 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 TEPSINQ96N21 525 aa17.08■□□□□ 0.32
SHMT2-210ENST00000553950 RASA1P20936 1047 aa17.07■□□□□ 0.32
SHMT2-210ENST00000553950 MAP3K10Q02779 954 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms