RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 MROH7-TTC4A0A0A0MT08 1334 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 MYH6P13533 1939 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 LIFRP42702 1097 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 BTDP43251 543 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 UBAC1Q9BSL1 405 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 GRPEL1Q9HAV7 217 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 NTRK3Q16288 839 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 CERS5Q8N5B7 392 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 ENAHQ8N8S7 591 aaPredicted RBP14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 ESR2Q92731 530 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 CHMP4CQ96CF2 233 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 SCN9AQ15858 1988 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 ALDH1B1P30837 517 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 UBE2HP62256 183 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 SEC23AQ15436 765 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 SLC44A5Q8NCS7 719 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 C8orf76Q96K31 380 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 DBNDD1Q9H9R9 158 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 ATP8A2Q9NTI2 1148 aa14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 MKRN1Q9UHC7 482 aaKnown RBP14.89□□□□□ -0.03
VIPAS39-206ENST00000553888 DHX16O60231 1041 aaKnown RBP14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 HMGB2P26583 209 aaKnown RBP14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 LEO1Q8WVC0 666 aaPredicted RBP14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 SPATA32Q96LK8 384 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 ZC3H12CQ9C0D7 883 aaKnown RBP14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 MYH1P12882 1939 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 ERICH2A1L162 156 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 KIF28PB7ZC32 967 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 GUCY1A2P33402 732 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 GIMAP6Q6P9H5 292 aa14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.88□□□□□ -0.03
VIPAS39-206ENST00000553888 POLR3DP05423 398 aaPredicted RBP14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 PLCD1P51178 756 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 ZNF445P59923 1031 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 SART3Q15020 963 aaKnown RBP14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 ZNF654Q8IZM8 581 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 ZSCAN10Q96SZ4 725 aaPredicted RBP14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 SLC26A6Q9BXS9 759 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 DLEC1Q9Y238 1755 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 H0YIN7 160 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 TMEM132AQ24JP5 1023 aa14.87□□□□□ -0.03
VIPAS39-206ENST00000553888 LIG1P18858 919 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 SCNN1DP51172 638 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 GSTO1P78417 241 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 L1TD1Q5T7N2 865 aaKnown RBP14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 TMC4Q7Z404 712 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 PGBD1Q96JS3 809 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 USP28Q96RU2 1077 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 ALG1Q9BT22 464 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 KIF3AQ9Y496 699 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 hCG_1642624A0A1W2PR95 340 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 IGSF3O75054 1194 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 FBXO18Q8NFZ0 1043 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 FBXO41Q8TF61 875 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 ARPP21Q9UBL0 812 aaPredicted RBP14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 ZBTB22O15209 634 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 FGRP09769 529 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 RTN1Q16799 776 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 C12orf60Q5U649 245 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 COA1Q9GZY4 146 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 RBSNQ9H1K0 784 aa14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 ZSCAN16Q9H4T2 348 aaPredicted RBP14.86□□□□□ -0.03
VIPAS39-206ENST00000553888 BAG3O95817 575 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 IARSP41252 1262 aaKnown RBP14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 SYNE3Q6ZMZ3 975 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 TEX11Q8IYF3 940 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 NOL10Q9BSC4 688 aaKnown RBP14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 FAM205AQ6ZU69 1335 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 GPR75-ASB3A0A0A6YYF3 556 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 MRE11P49959 708 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 RHBDL3P58872 404 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 PPP4CP60510 307 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 SBK1Q52WX2 424 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 IFIT1BQ5T764 474 aaKnown RBP14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 DAGLAQ9Y4D2 1042 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 PCDHAC2Q9Y5I4 1007 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 QSER1Q2KHR3 1735 aa14.85□□□□□ -0.03
VIPAS39-206ENST00000553888 FANCBQ8NB91 859 aa14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 DDX60LQ5H9U9 1706 aaKnown RBP14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 G3V3G9 751 aa14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 LDHCP07864 332 aa14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 DCAF8Q5TAQ9 597 aa14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 FOCADQ5VW36 1801 aa14.84□□□□□ -0.03
VIPAS39-206ENST00000553888 TSPY2A6NKD2 308 aa14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 PLEKHA8P1O95397 391 aa14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 PICALMQ13492 652 aa14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 KRT40Q6A162 431 aa14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 NBPF11Q86T75 865 aa14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 SCAND2PQ9GZW5 306 aaPredicted RBP14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 TTF2Q9UNY4 1162 aaKnown RBP14.83□□□□□ -0.03
VIPAS39-206ENST00000553888 USP17L3A6NCW0 530 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 USP17L4A6NCW7 530 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 ORC4O43929 436 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 SSRP1Q08945 709 aaKnown RBP14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 SF3B2Q13435 895 aaKnown RBP14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 CSPP1Q1MSJ5 1256 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 LRSAM1Q6UWE0 723 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 USP17L1Q7RTZ2 530 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 IQCA1Q86XH1 822 aa14.83□□□□□ -0.04
VIPAS39-206ENST00000553888 TBC1D22AQ8WUA7 517 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms