RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 ATP6V1DQ9Y5K8 247 aa7.14□□□□□ -1.27
VIPAS39-204ENST00000553576 NDUFB9Q9Y6M9 179 aa7.14□□□□□ -1.27
VIPAS39-204ENST00000553576 DDX49Q9Y6V7 483 aaKnown RBP7.14□□□□□ -1.27
VIPAS39-204ENST00000553576 MYH13Q9UKX3 1938 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ATRNO75882 1429 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 MAST3O60307 1309 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 WDR19Q8NEZ3 1342 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 LARGE1O95461 756 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 MBD3O95983 291 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ZSCAN22P10073 491 aaPredicted RBP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 SLC5A1P13866 664 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 PDCP20941 246 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 SYT1P21579 422 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ADD2P35612 726 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 MCAMP43121 646 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ZAP70P43403 619 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 MRE11P49959 708 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 FKBP4Q02790 459 aaKnown RBP eCLIP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ST3GAL1Q11201 340 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ALX1Q15699 326 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 PTPRNQ16849 979 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 CCDC102BQ68D86 513 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 CCDC129Q6ZRS4 1044 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 RGS22Q8NE09 1264 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 CDC5LQ99459 802 aaKnown RBP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 LLPHQ9BRT6 129 aaKnown RBP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 NARFQ9UHQ1 456 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 USP21Q9UK80 565 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 NIP7Q9Y221 180 aaKnown RBP eCLIP7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 CCDC88AQ3V6T2 1871 aa7.13□□□□□ -1.27
VIPAS39-204ENST00000553576 ZMYM6O95789 1325 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 IGSF3O75054 1194 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 PRPF40AO75400 957 aaKnown RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 CHGBP05060 677 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 HCLS1P14317 486 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 HMGB2P26583 209 aaKnown RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 GJB2P29033 226 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 IGHMBP2P38935 993 aaKnown RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 MDM2Q00987 491 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 C6orf118Q5T5N4 469 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 GPAT2Q6NUI2 795 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 NOL8Q76FK4 1167 aaKnown RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 GPIHBP1Q8IV16 184 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 CCDC83Q8IWF9 413 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 ZNF274Q96GC6 653 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 GJD4Q96KN9 370 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 CCDC85AQ96PX6 553 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 MPHOSPH8Q99549 860 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 NYXQ9GZU5 481 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 EVA1BQ9NVM1 165 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 BSDC1Q9NW68 430 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 MTMR6Q9Y217 621 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 TAF6LQ9Y6J9 622 aa7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 DNMT3AQ9Y6K1 912 aaPredicted RBP7.12□□□□□ -1.27
VIPAS39-204ENST00000553576 C4AP0C0L4 1744 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 C4BP0C0L5 1744 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 TCRBV5S4A2TA0A5A2 114 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 E7EWF7 191 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 M0R2C6 588 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 FOXP2O15409 715 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 PFKFB2O60825 505 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 F13A1P00488 732 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 FGAP02671 866 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 XRCC6P12956 609 aaKnown RBP eCLIP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 COL9A3Q14050 684 aaPredicted RBP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 UBE4AQ14139 1066 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 LARP1BQ659C4 914 aaKnown RBP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 TMED8Q6PL24 325 aaPredicted RBP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 Q6ZUG5 572 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 STOX1Q6ZVD7 989 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 GPR161Q8N6U8 529 aaKnown RBP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 SMARCC2Q8TAQ2 1214 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 GPT2Q8TD30 523 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 GTF3C6Q969F1 213 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 CNTNAP3BQ96NU0 1288 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 CNTNAP3Q9BZ76 1288 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 PUS7LQ9H0K6 701 aaKnown RBP7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 ZFAND3Q9H8U3 227 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 SEC31BQ9NQW1 1179 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 UBR3Q6ZT12 1888 aa7.11□□□□□ -1.27
VIPAS39-204ENST00000553576 KIAA1551Q9HCM1 1747 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 ZNF804BA4D1E1 1349 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 ZIC2O95409 532 aaPredicted RBP7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 IGHA1P01876 353 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 PHKA1P46020 1223 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 CHRNDQ07001 517 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 KCNH2Q12809 1159 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 IMMTQ16891 758 aaKnown RBP7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 CSPP1Q1MSJ5 1256 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 SLFNL1Q499Z3 407 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 XP32Q5T750 250 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 SLC9C2Q5TAH2 1124 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 GAS2L3Q86XJ1 694 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 SPATA5Q8NB90 893 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 GZF1Q9H116 711 aaPredicted RBP7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 GRPEL1Q9HAV7 217 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 TRPC5Q9UL62 973 aaPredicted RBP7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 PCDHGC3Q9UN70 934 aa7.1□□□□□ -1.27
VIPAS39-204ENST00000553576 PDS5AQ29RF7 1337 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms