RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 AK9Q5TCS8 1911 aa14.6□□□□□ -0.07
CKAP4-202ENST00000552828 IPO8O15397 1037 aaKnown RBP14.59□□□□□ -0.07
CKAP4-202ENST00000552828 FARP2O94887 1054 aaPredicted RBP14.59□□□□□ -0.07
CKAP4-202ENST00000552828 GNAI2P04899 355 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 INHAP05111 366 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 TRIM27P14373 513 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 ELNP15502 786 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 FAM110CQ1W6H9 321 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 CHRDL2Q6WN34 429 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 CCDC84Q86UT8 332 aaPredicted RBP14.59□□□□□ -0.07
CKAP4-202ENST00000552828 ANKRD13CQ8N6S4 541 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 ZNF280CQ8ND82 737 aa14.59□□□□□ -0.07
CKAP4-202ENST00000552828 PAK6Q9NQU5 681 aaPredicted RBP14.59□□□□□ -0.07
CKAP4-202ENST00000552828 RBM27Q9P2N5 1060 aaKnown RBP14.59□□□□□ -0.07
CKAP4-202ENST00000552828 PHIPQ8WWQ0 1821 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 PNMA6EA0A0J9YXQ4 647 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 UQCRFS1P1P0C7P4 283 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 CAP2P40123 477 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 MCAMP43121 646 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 GCLCP48506 637 aaPredicted RBP14.58□□□□□ -0.08
CKAP4-202ENST00000552828 SPP2Q13103 211 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 RRP1BQ14684 758 aaKnown RBP14.58□□□□□ -0.08
CKAP4-202ENST00000552828 SH3D19Q5HYK7 790 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 GORABQ5T7V8 394 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 COA7Q96BR5 231 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 CRISPLD2Q9H0B8 497 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 RAI14Q9P0K7 980 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 HERC5Q9UII4 1024 aaKnown RBP14.58□□□□□ -0.08
CKAP4-202ENST00000552828 NR2E3Q9Y5X4 410 aa14.58□□□□□ -0.08
CKAP4-202ENST00000552828 DOCK1Q14185 1865 aa14.57□□□□□ -0.08
CKAP4-202ENST00000552828 FAM196BA6NMK8 535 aa14.57□□□□□ -0.08
CKAP4-202ENST00000552828 ZBTB7BO15156 539 aaPredicted RBP14.57□□□□□ -0.08
CKAP4-202ENST00000552828 G3BP1Q13283 466 aaKnown RBP eCLIP14.57□□□□□ -0.086e-9■□□□□ 8.4
CKAP4-202ENST00000552828 PABPC4Q13310 644 aaKnown RBP eCLIP14.57□□□□□ -0.08
CKAP4-202ENST00000552828 ATF7IPQ6VMQ6 1270 aa14.57□□□□□ -0.08
CKAP4-202ENST00000552828 METTL16Q86W50 562 aaKnown RBP14.57□□□□□ -0.08
CKAP4-202ENST00000552828 YTHDC1Q96MU7 727 aaKnown RBP14.57□□□□□ -0.08
CKAP4-202ENST00000552828 GPR108Q9NPR9 543 aa14.57□□□□□ -0.08
CKAP4-202ENST00000552828 USP17L5A8MUK1 530 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 IGSF3O75054 1194 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 BCAR3O75815 825 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 HMGCS2P54868 508 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 PPP4CP60510 307 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 TEX11Q8IYF3 940 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 DEFB118Q96PH6 123 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 WDR18Q9BV38 432 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 DHX36Q9H2U1 1008 aaKnown RBP14.56□□□□□ -0.08
CKAP4-202ENST00000552828 LRP2BPQ9P2M1 347 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 PI4KBQ9UBF8 816 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 GJD2Q9UKL4 321 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 MGAMO43451 1857 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 PTPRFP10586 1907 aa14.56□□□□□ -0.08
CKAP4-202ENST00000552828 TFRCP02786 760 aaKnown RBP14.55□□□□□ -0.08
CKAP4-202ENST00000552828 POLA2Q14181 598 aa14.55□□□□□ -0.08
CKAP4-202ENST00000552828 SH3RF3Q8TEJ3 882 aaPredicted RBP14.55□□□□□ -0.08
CKAP4-202ENST00000552828 FRAT1Q92837 279 aaPredicted RBP14.55□□□□□ -0.08
CKAP4-202ENST00000552828 ZNF512BQ96KM6 892 aaPredicted RBP14.55□□□□□ -0.08
CKAP4-202ENST00000552828 ASCC2Q9H1I8 757 aaPredicted RBP14.55□□□□□ -0.08
CKAP4-202ENST00000552828 MORF4L1Q9UBU8 362 aa14.55□□□□□ -0.08
CKAP4-202ENST00000552828 LAMA3Q16787 3333 aa14.55□□□□□ -0.08
CKAP4-202ENST00000552828 A0A1W2PPC1 479 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 BAG3O95817 575 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 PLCG2P16885 1265 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 HOXA7P31268 230 aaPredicted RBP14.54□□□□□ -0.08
CKAP4-202ENST00000552828 BACE1P56817 501 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 AS3MTQ9HBK9 375 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 TNNQ9UQP3 1299 aa14.54□□□□□ -0.08
CKAP4-202ENST00000552828 HMGCRP04035 888 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 ASNSP08243 561 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 TNNI3KQ59H18 835 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 NAA16Q6N069 864 aaPredicted RBP14.53□□□□□ -0.08
CKAP4-202ENST00000552828 FOXP4Q8IVH2 680 aaPredicted RBP14.53□□□□□ -0.08
CKAP4-202ENST00000552828 ANKLE1Q8NAG6 615 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 SSH3Q8TE77 659 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 NOL10Q9BSC4 688 aaKnown RBP14.53□□□□□ -0.08
CKAP4-202ENST00000552828 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.53□□□□□ -0.08
CKAP4-202ENST00000552828 DNAJC18Q9H819 358 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 GINM1Q9NU53 330 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 FPGT-TNNI3KV9GXZ4 949 aa14.53□□□□□ -0.08
CKAP4-202ENST00000552828 LOC285556D6RIA3 1793 aa14.52□□□□□ -0.08
CKAP4-202ENST00000552828 EVI5O60447 810 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 CYP2E1P05181 493 aaPredicted RBP14.52□□□□□ -0.09
CKAP4-202ENST00000552828 JAG1P78504 1218 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 ATP8B2P98198 1209 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 CCDC158Q5M9N0 1113 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 ZKSCAN2Q63HK3 967 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 ADGRA1Q86SQ6 560 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 TGFBRAP1Q8WUH2 860 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 PAWRQ96IZ0 340 aaKnown RBP14.52□□□□□ -0.09
CKAP4-202ENST00000552828 SNRKQ9NRH2 765 aa14.52□□□□□ -0.09
CKAP4-202ENST00000552828 AATFQ9NY61 560 aaKnown RBP eCLIP14.52□□□□□ -0.09
CKAP4-202ENST00000552828 FLT1P17948 1338 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 RPTORQ8N122 1335 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 C19orf81C9J6K1 198 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 MTMR2Q13614 643 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 TTC39AQ5SRH9 613 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 NECAB2Q7Z6G3 386 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 TMEM57Q8N5G2 664 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 CLUAP1Q96AJ1 413 aa14.51□□□□□ -0.09
CKAP4-202ENST00000552828 P2RX7Q99572 595 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms