RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 DPYSL4O14531 572 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 PRC1O43663 620 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 DHX16O60231 1041 aaKnown RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 BAG3O95817 575 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 ZSCAN22P10073 491 aaPredicted RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 GJB2P29033 226 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 PRDX5P30044 214 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 SCRN1Q12765 414 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 SF3B2Q13435 895 aaKnown RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 C10orf71Q711Q0 1435 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 TBC1D10CQ8IV04 446 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 ANKS1AQ92625 1134 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 BRF1Q92994 677 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 CRNKL1Q9BZJ0 848 aaKnown RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 ZC3H12CQ9C0D7 883 aaKnown RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 DCP1AQ9NPI6 582 aaPredicted RBP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 ZSWIM5Q9P217 1185 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 MTMR6Q9Y217 621 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.56□□□□□ -0.56
TMEM116-216ENST00000552800 ATP6V1DQ9Y5K8 247 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 TACC3Q9Y6A5 838 aa11.56□□□□□ -0.56
TMEM116-216ENST00000552800 MYH2Q9UKX2 1941 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 GOLGA6L22H0YM25 854 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 PRKAB2O43741 272 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 SLC34A2O95436 690 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 CTDNEP1O95476 244 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 PPARAQ07869 468 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 CTR9Q6PD62 1173 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 MFSD6Q6ZSS7 791 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 RALYLQ86SE5 291 aaKnown RBP11.55□□□□□ -0.56
TMEM116-216ENST00000552800 CCDC83Q8IWF9 413 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 NSUN7Q8NE18 718 aaKnown RBP11.55□□□□□ -0.56
TMEM116-216ENST00000552800 OXER1Q8TDS5 423 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 LMBRD1Q9NUN5 540 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 ARPP21Q9UBL0 812 aaPredicted RBP11.55□□□□□ -0.56
TMEM116-216ENST00000552800 IQSEC3Q9UPP2 1182 aaPredicted RBP11.55□□□□□ -0.56
TMEM116-216ENST00000552800 HPS5Q9UPZ3 1129 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 SLX4Q8IY92 1834 aa11.55□□□□□ -0.56
TMEM116-216ENST00000552800 ROBO3Q96MS0 1386 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 APPP05067 770 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 KCNA3P22001 575 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 NOVP48745 357 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 TGFB2P61812 414 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 SEC23AQ15436 765 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 KLHL40Q2TBA0 621 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 C12orf60Q5U649 245 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 ATL3Q6DD88 541 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 HHIPL2Q6UWX4 724 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 CYB5R4Q7L1T6 521 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 C2CD5Q86YS7 1000 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 PTCD2Q8WV60 388 aaKnown RBP11.54□□□□□ -0.56
TMEM116-216ENST00000552800 PSMD1Q99460 953 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 MAP3K14Q99558 947 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 TMX4Q9H1E5 349 aaPredicted RBP11.54□□□□□ -0.56
TMEM116-216ENST00000552800 ZSCAN16Q9H4T2 348 aaPredicted RBP11.54□□□□□ -0.56
TMEM116-216ENST00000552800 TCP11L1Q9NUJ3 509 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 BRPF3Q9ULD4 1205 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 KIF3AQ9Y496 699 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 MROH7-TTC4A0A0A0MT08 1334 aa11.54□□□□□ -0.56
TMEM116-216ENST00000552800 ZNF646O15015 1829 aaPredicted RBP11.53□□□□□ -0.56
TMEM116-216ENST00000552800 TCHHQ07283 1943 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 TRAK2O60296 914 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 F13A1P00488 732 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 MMP14P50281 582 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 RHBDL3P58872 404 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 HAND2P61296 217 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 NTRK3Q16288 839 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 STRIP1Q5VSL9 837 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 LARP1BQ659C4 914 aaKnown RBP11.53□□□□□ -0.56
TMEM116-216ENST00000552800 DPP8Q6V1X1 898 aaPredicted RBP11.53□□□□□ -0.56
TMEM116-216ENST00000552800 ZNF687Q8N1G0 1237 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 NECAB1Q8N987 351 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 SUPT20HQ8NEM7 779 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 TCEANC2Q96MN5 208 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 LY9Q9HBG7 655 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 ISY1Q9ULR0 285 aaKnown RBP11.53□□□□□ -0.56
TMEM116-216ENST00000552800 FOCADQ5VW36 1801 aa11.53□□□□□ -0.56
TMEM116-216ENST00000552800 C6orf229H3BNL8 230 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
TMEM116-216ENST00000552800 TDO2P48775 406 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 DYNLL1P63167 89 aaKnown RBP11.52□□□□□ -0.57
TMEM116-216ENST00000552800 MAP3K9P80192 1104 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 APOBRQ0VD83 1088 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 KIAA2012Q0VF49 1180 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 NBR1Q14596 966 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 CCDC178Q5BJE1 867 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 MIGA1Q8NAN2 632 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 NKX2-3Q8TAU0 364 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 SDR42E1Q8WUS8 393 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 ESR2Q92731 530 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 FAM217BQ9NTX9 383 aaPredicted RBP11.52□□□□□ -0.57
TMEM116-216ENST00000552800 PCDHGA4Q9Y5G9 962 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 CDK5RAP2Q96SN8 1893 aa11.52□□□□□ -0.57
TMEM116-216ENST00000552800 PSME4Q14997 1843 aa11.51□□□□□ -0.57
TMEM116-216ENST00000552800 BAZ2AQ9UIF9 1905 aaKnown RBP11.51□□□□□ -0.57
TMEM116-216ENST00000552800 USP17L12C9JPN9 530 aa11.51□□□□□ -0.57
TMEM116-216ENST00000552800 USP17L21D6R901 530 aa11.51□□□□□ -0.57
TMEM116-216ENST00000552800 RIMBP2O15034 1052 aa11.51□□□□□ -0.57
TMEM116-216ENST00000552800 SART3Q15020 963 aaKnown RBP11.51□□□□□ -0.57
TMEM116-216ENST00000552800 GRIK5Q16478 980 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms