RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 OVOL3O00110 214 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 TNFRSF21O75509 655 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 SASH1O94885 1247 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 INSRRP14616 1297 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 SSFA2P28290 1259 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 DLG4P78352 724 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 AP3B2Q13367 1082 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 PUM1Q14671 1186 aaKnown RBP eCLIP3.88□□□□□ -1.79
LIMA1-209ENST00000552008 NPAS4Q8IUM7 802 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 SNX29Q8TEQ0 813 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 CRELD1Q96HD1 420 aa3.88□□□□□ -1.79
LIMA1-209ENST00000552008 CCDC86Q9H6F5 360 aaKnown RBP3.88□□□□□ -1.79
LIMA1-209ENST00000552008 SSU72Q9NP77 194 aaKnown RBP3.88□□□□□ -1.79
LIMA1-209ENST00000552008 CXXC1Q9P0U4 656 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-209ENST00000552008 CNOT6Q9ULM6 557 aaKnown RBP3.88□□□□□ -1.79
LIMA1-209ENST00000552008 AKAP8O43823 692 aaKnown RBP3.87□□□□□ -1.79
LIMA1-209ENST00000552008 ABL1P00519 1130 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 NEFMP07197 916 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 GRIA4P48058 902 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 SPATS1Q496A3 300 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 ZNF385BQ569K4 471 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 CCNJLQ8IV13 435 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.87□□□□□ -1.79
LIMA1-209ENST00000552008 ATP13A1Q9HD20 1204 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 SEMA3GQ9NS98 782 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 BIN2Q9UBW5 565 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-209ENST00000552008 FOXD3Q9UJU5 478 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-209ENST00000552008 AMOTL2Q9Y2J4 779 aa3.87□□□□□ -1.79
LIMA1-209ENST00000552008 RFXAPO00287 272 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 ZNF862O60290 1169 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 MZF1P28698 734 aaPredicted RBP3.86□□□□□ -1.79
LIMA1-209ENST00000552008 FAM69CQ0P6D2 419 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 TMEM151BQ8IW70 566 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 ISL2Q96A47 359 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 ALPK1Q96QP1 1244 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 ZC3H12CQ9C0D7 883 aaKnown RBP3.86□□□□□ -1.79
LIMA1-209ENST00000552008 MCOLN1Q9GZU1 580 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 KCTD3Q9Y597 815 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 PCDHGC5Q9Y5F6 944 aa3.86□□□□□ -1.79
LIMA1-209ENST00000552008 SEMA7AO75326 666 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 EFEMP1Q12805 493 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 KIF4BQ2VIQ3 1234 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 TTC6Q86TZ1 520 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 MYLIPQ8WY64 445 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 HSPA12BQ96MM6 686 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 TCF12Q99081 682 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 LIN7BQ9HAP6 207 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 SLAMF8Q9P0V8 285 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 MYRFQ9Y2G1 1151 aa3.85□□□□□ -1.79
LIMA1-209ENST00000552008 SERPINB4P48594 390 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 HNRNPUQ00839 825 aaKnown RBP eCLIP3.84□□□□□ -1.79
LIMA1-209ENST00000552008 AAMPQ13685 434 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 CCDC27Q2M243 656 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 GLYCTKQ8IVS8 523 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 FOXQ1Q9C009 403 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 ZNF576Q9H609 170 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 PRDM10Q9NQV6 1147 aa3.84□□□□□ -1.79
LIMA1-209ENST00000552008 GNEQ9Y223 722 aaKnown RBP3.84□□□□□ -1.79
LIMA1-209ENST00000552008 MYOCOSA0A1B0GUC4 107 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 A0A1W2PP55 124 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 FAM155AB1AL88 458 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 H3BRB1 525 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 POLR3DP05423 398 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 MFAP1P55081 439 aaKnown RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 ERVFC1P60507 584 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 NOM1Q5C9Z4 860 aaKnown RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 CDKAL1Q5VV42 579 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 PHLDB3Q6NSJ2 640 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 SND1Q7KZF4 910 aaKnown RBP eCLIP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 TXNDC2Q86VQ3 553 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 FEZF2Q8TBJ5 459 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 TUT1Q9H6E5 874 aaKnown RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 ANO2Q9NQ90 1003 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 PRDM5Q9NQX1 630 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-209ENST00000552008 SLAIN2Q9P270 581 aa3.83□□□□□ -1.8
LIMA1-209ENST00000552008 H3BS24 57 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 PEX10O60683 326 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 HK2P52789 917 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 ZNF211Q13398 564 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-209ENST00000552008 SSPNQ14714 243 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 TMEM132EQ6IEE7 984 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 ZNF605Q86T29 641 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 ZDHHC14Q8IZN3 488 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 GTF3C2Q8WUA4 911 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-209ENST00000552008 TEPSINQ96N21 525 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 GPR20Q99678 358 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 RNF32Q9H0A6 362 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 ZFYVE28Q9HCC9 887 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 KRT82Q9NSB4 513 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 POLIQ9UNA4 740 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 MAPK8IP1Q9UQF2 711 aa3.82□□□□□ -1.8
LIMA1-209ENST00000552008 DNAJC25-GNG10A0A024R161 153 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 TEX51A0A1B0GUA7 166 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 SOWAHDA6NJG2 315 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 EOMESO95936 686 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 HPXP02790 462 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 FKBP4Q02790 459 aaKnown RBP eCLIP3.81□□□□□ -1.8
LIMA1-209ENST00000552008 EHHADHQ08426 723 aa3.81□□□□□ -1.8
LIMA1-209ENST00000552008 SF3B2Q13435 895 aaKnown RBP3.81□□□□□ -1.8
LIMA1-209ENST00000552008 IRF2BP1Q8IU81 584 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms