RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	KCNA10	Q16322	511 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	OCLN	Q16625	522 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CIAPIN1	Q6FI81	312 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CAPN12	Q6ZSI9	719 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	ARHGAP27	Q6ZUM4	889 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CLUAP1	Q96AJ1	413 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	MKNK1	Q9BUB5	465 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CD320	Q9NPF0	282 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	PLAGL2	Q9UPG8	496 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CNTLN	Q9NXG0	1405 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	NUP153	P49790	1475 aa	Known RBP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZNF142	P52746	1687 aa	Predicted RBP	4.09	□□□□□ -1.76
PTCH1-223	ENST00000551623	C3	P01024	1663 aa		4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	LMOD1	P29536	600 aa	Predicted RBP	4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	SWI5	Q1ZZU3	235 aa		4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	CAMSAP1	Q5T5Y3	1602 aa		4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	ZFYVE1	Q9HBF4	777 aa		4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	RGS17	Q9UGC6	210 aa	Predicted RBP	4.08	□□□□□ -1.76
PTCH1-223	ENST00000551623	MROH2A	A6NES4	1674 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	CTTNBP2	Q8WZ74	1663 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	ZNF518A	Q6AHZ1	1483 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	PLCH2	O75038	1416 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	PTPRK	Q15262	1439 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	AOC2	O75106	756 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	TMEM253	P0C7T8	217 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	CEBPA	P49715	358 aa	Predicted RBP	4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	ZP2	Q05996	745 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	KIRREL1	Q96J84	757 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	TNKS2	Q9H2K2	1166 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	SNX11	Q9Y5W9	270 aa		4.07	□□□□□ -1.76
PTCH1-223	ENST00000551623	SAMD9	Q5K651	1589 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	DIP2C	Q9Y2E4	1556 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	PRX	Q9BXM0	1461 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	MLH3	Q9UHC1	1453 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	SCAPER	Q9BY12	1400 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ACIN1	Q9UKV3	1341 aa	Known RBP	4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	TCAF2	A6NFQ2	919 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	EREG	O14944	169 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	FOXD2	O60548	495 aa	Predicted RBP	4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	TOM1	O60784	492 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ECEL1	O95672	775 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	EDN3	P14138	238 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ITIH2	P19823	946 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	IKZF1	Q13422	519 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	TMEM67	Q5HYA8	995 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ATG14	Q6ZNE5	492 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ATCAY	Q86WG3	371 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	ASB11	Q8WXH4	323 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	DIRC2	Q96SL1	478 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	CORO1B	Q9BR76	489 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	WDR18	Q9BV38	432 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	GGNBP2	Q9H3C7	697 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	NSUN3	Q9H649	340 aa	Known RBP	4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	PPP1R9A	Q9ULJ8	1098 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	RAPGEF6	Q8TEU7	1601 aa		4.06	□□□□□ -1.76
PTCH1-223	ENST00000551623	SYNGAP1	Q96PV0	1343 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623		A6NHS1	94 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	METTL12	A8MUP2	240 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	TMPRSS2	O15393	492 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	NUAK1	O60285	661 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	LEFTY1	O75610	366 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	MED14OS	P0DP75	135 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	PCDH1	Q08174	1060 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	ZNF423	Q2M1K9	1284 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	EDEM1	Q92611	657 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	DUSP23	Q9BVJ7	150 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	PIDD1	Q9HB75	910 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	PARD6A	Q9NPB6	346 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	NOVA2	Q9UNW9	492 aa	Known RBP	4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	SHANK2	Q9UPX8	1470 aa		4.05	□□□□□ -1.76
PTCH1-223	ENST00000551623	MYO3A	Q8NEV4	1616 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623		A0A0G2JLL6	359 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	PCSK2	P16519	638 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	PDE3A	Q14432	1141 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	C8orf34	Q49A92	452 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	PEAR1	Q5VY43	1037 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	CYFIP1	Q7L576	1253 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	TTC16	Q8NEE8	873 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	TRIM56	Q9BRZ2	755 aa	Known RBP	4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	CLEC4M	Q9H2X3	399 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	VWDE	Q8N2E2	1590 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	NEURL4	Q96JN8	1562 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	MED14	O60244	1454 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	SRCAP	Q6ZRS2	3230 aa		4.04	□□□□□ -1.76
PTCH1-223	ENST00000551623	PITPNM2	Q9BZ72	1349 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623		A0A096LPE4	126 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623		A0A1W2PPZ6	126 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	SYN1	P17600	705 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	RFX1	P22670	979 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	GLDC	P23378	1020 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	LINC00310	P59036	64 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	KRTAP10-2	P60368	255 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	DNM1	Q05193	864 aa	Known RBP	4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	MLEC	Q14165	292 aa		4.03	□□□□□ -1.76
PTCH1-223	ENST00000551623	GGN	Q86UU5	652 aa		4.03	□□□□□ -1.76

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