RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CCDC57Q2TAC2 916 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 CRY2Q49AN0 593 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 OTUD7AQ8TE49 926 aaPredicted RBP10.29□□□□□ -0.76
VPS29-203ENST00000546588 BAP1Q92560 729 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 SETDB2Q96T68 719 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 CEP126Q9P2H0 1117 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 SRP68Q9UHB9 627 aaKnown RBP10.29□□□□□ -0.76
VPS29-203ENST00000546588 RIPOR2Q9Y4F9 1068 aa10.29□□□□□ -0.76
VPS29-203ENST00000546588 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.29□□□□□ -0.76
VPS29-203ENST00000546588 CCDC88AQ3V6T2 1871 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 EPB41L2O43491 1005 aaKnown RBP10.28□□□□□ -0.76
VPS29-203ENST00000546588 IGSF3O75054 1194 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 ITGA6P23229 1130 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 VARSP26640 1264 aaKnown RBP10.28□□□□□ -0.76
VPS29-203ENST00000546588 NFIXQ14938 502 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 CCDC152Q4G0S7 254 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 CRTC2Q53ET0 693 aaPredicted RBP10.28□□□□□ -0.76
VPS29-203ENST00000546588 TNNI3KQ59H18 835 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 C16orf71Q8IYS4 520 aaPredicted RBP10.28□□□□□ -0.76
VPS29-203ENST00000546588 SYNE4Q8N205 404 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 ZNF511Q8NB15 262 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS29-203ENST00000546588 EAF2Q96CJ1 260 aaPredicted RBP10.28□□□□□ -0.76
VPS29-203ENST00000546588 ZFP42Q96MM3 310 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 GREM2Q9H772 168 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 TLL2Q9Y6L7 1015 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 FPGT-TNNI3KV9GXZ4 949 aa10.28□□□□□ -0.76
VPS29-203ENST00000546588 ANKRD18BA2A2Z9 1011 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 POLRMTO00411 1230 aaKnown RBP10.27□□□□□ -0.77
VPS29-203ENST00000546588 GLRX3O76003 335 aaKnown RBP10.27□□□□□ -0.77
VPS29-203ENST00000546588 GLIPR1L2Q4G1C9 344 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 PDXDC2PQ6P474 469 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 TPTE2Q6XPS3 522 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 KLHDC4Q8TBB5 520 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 ZNF592Q92610 1267 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 JARID2Q92833 1246 aaPredicted RBP10.27□□□□□ -0.77
VPS29-203ENST00000546588 KLF16Q9BXK1 252 aaPredicted RBP10.27□□□□□ -0.77
VPS29-203ENST00000546588 ECHDC1Q9NTX5 307 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 LAMA4Q16363 1823 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 MROH5Q6ZUA9 1318 aa10.27□□□□□ -0.77
VPS29-203ENST00000546588 FAM196BA6NMK8 535 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 ERC2O15083 957 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 FGFR2P21802 821 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 SLC15A2Q16348 729 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 LINC01559Q495D7 138 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 ERFEQ4G0M1 354 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 NLGN1Q8N2Q7 840 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 ZSCAN1Q8NBB4 408 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 PLPP7Q8NBV4 271 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 FAM200AQ8TCP9 573 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 ZNF512BQ96KM6 892 aaPredicted RBP10.26□□□□□ -0.77
VPS29-203ENST00000546588 ARHGAP9Q9BRR9 750 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 IL1RAPL2Q9NP60 686 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 DBNLQ9UJU6 430 aaKnown RBP10.26□□□□□ -0.77
VPS29-203ENST00000546588 GPSM3Q9Y4H4 160 aa10.26□□□□□ -0.77
VPS29-203ENST00000546588 CDC45O75419 566 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 ATP5JP18859 108 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 SDSP20132 328 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 BAG6P46379 1132 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 DDR1Q08345 913 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 TFCP2Q12800 502 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 EZH2Q15910 746 aaKnown RBP10.25□□□□□ -0.77
VPS29-203ENST00000546588 LRRC24Q50LG9 513 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 PRR5LQ6MZQ0 368 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 ZBTB33Q86T24 672 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 NBPF5PQ86XG9 351 aaPredicted RBP10.25□□□□□ -0.77
VPS29-203ENST00000546588 COL23A1Q86Y22 540 aaPredicted RBP10.25□□□□□ -0.77
VPS29-203ENST00000546588 ADAM32Q8TC27 787 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 GPKOWQ92917 476 aaPredicted RBP eCLIP10.25□□□□□ -0.77
VPS29-203ENST00000546588 GPATCH3Q96I76 525 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 NAP1L5Q96NT1 182 aaPredicted RBP10.25□□□□□ -0.77
VPS29-203ENST00000546588 AKAP2Q9Y2D5 859 aa10.25□□□□□ -0.77
VPS29-203ENST00000546588 C10orf71Q711Q0 1435 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 LOC100996750A0A140TA64 210 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 FAM181BA6NEQ2 426 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 PDE8BO95263 885 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 HCLS1P14317 486 aaPredicted RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 TIMP2P16035 220 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 HOXA10P31260 410 aaPredicted RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 VEGFBP49765 207 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 NNTQ13423 1086 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 OS9Q13438 667 aaPredicted RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 SMIM5Q71RC9 77 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 AACSQ86V21 672 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 CNBD1Q8NA66 436 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 IL17RAQ96F46 866 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 CDC5LQ99459 802 aaKnown RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 KRTAP4-6Q9BYQ5 205 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 PUS3Q9BZE2 481 aaKnown RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 SIL1Q9H173 461 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 BSDC1Q9NW68 430 aaPredicted RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 RBM19Q9Y4C8 960 aaKnown RBP10.24□□□□□ -0.77
VPS29-203ENST00000546588 SNED1Q8TER0 1413 aa10.24□□□□□ -0.77
VPS29-203ENST00000546588 FOCADQ5VW36 1801 aa10.23□□□□□ -0.77
VPS29-203ENST00000546588 ARFGEF1Q9Y6D6 1849 aa10.23□□□□□ -0.77
VPS29-203ENST00000546588 CHD4Q14839 1912 aa10.23□□□□□ -0.77
VPS29-203ENST00000546588 IFIT2P09913 472 aaKnown RBP10.23□□□□□ -0.77
VPS29-203ENST00000546588 PTK7Q13308 1070 aa10.23□□□□□ -0.77
VPS29-203ENST00000546588 EML3Q32P44 896 aa10.23□□□□□ -0.77
VPS29-203ENST00000546588 MRPL14Q6P1L8 145 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms