RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 IRF6O14896 467 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 CTNND1O60716 968 aaKnown RBP14.37□□□□□ -0.11
YBX3-217ENST00000546164 UBE3CQ15386 1083 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 SCYL3Q8IZE3 742 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 BRI3BPQ8WY22 251 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 PTPN18Q99952 460 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 RWDD1Q9H446 243 aaPredicted RBP14.37□□□□□ -0.11
YBX3-217ENST00000546164 KCNH4Q9UQ05 1017 aa14.37□□□□□ -0.11
YBX3-217ENST00000546164 CCL15-CCL14A0A0B4J2E2 113 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 ERC2O15083 957 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 GLRX3O76003 335 aaKnown RBP14.36□□□□□ -0.11
YBX3-217ENST00000546164 SLURP2P0DP57 97 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 CETPP11597 493 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 SNAPC2Q13487 334 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 CCL15Q16663 113 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 ANKRD45Q5TZF3 282 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 OTUD7BQ6GQQ9 843 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 ZSCAN25Q6NSZ9 544 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 FOXP4Q8IVH2 680 aaPredicted RBP14.36□□□□□ -0.11
YBX3-217ENST00000546164 TNS4Q8IZW8 715 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 KBTBD3Q8NAB2 608 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 PI4K2BQ8TCG2 481 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 OTUD7AQ8TE49 926 aaPredicted RBP14.36□□□□□ -0.11
YBX3-217ENST00000546164 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.36□□□□□ -0.11
YBX3-217ENST00000546164 FOCADQ5VW36 1801 aa14.36□□□□□ -0.11
YBX3-217ENST00000546164 CXCL11O14625 94 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 MX1P20591 662 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 USP5P45974 858 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 TSHZ3Q63HK5 1081 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 CRNKL1Q9BZJ0 848 aaKnown RBP14.35□□□□□ -0.11
YBX3-217ENST00000546164 ZCCHC17Q9NP64 241 aaKnown RBP14.35□□□□□ -0.11
YBX3-217ENST00000546164 PICK1Q9NRD5 415 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 FOXD4L1Q9NU39 408 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 ZBTB47Q9UFB7 747 aaPredicted RBP14.35□□□□□ -0.11
YBX3-217ENST00000546164 PALD1Q9ULE6 856 aa14.35□□□□□ -0.11
YBX3-217ENST00000546164 CDK5RAP2Q96SN8 1893 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 FAM196BA6NMK8 535 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 TBC1D8O95759 1140 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 HLA-DOAP06340 250 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 PTPRAP18433 802 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 CAP2P40123 477 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 LCORLQ8N3X6 602 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 EHD4Q9H223 541 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 DNAJC18Q9H819 358 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 STAP2Q9UGK3 403 aa14.34□□□□□ -0.11
YBX3-217ENST00000546164 GPR25O00155 361 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 IGHDP01880 384 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 RRP1BQ14684 758 aaKnown RBP14.33□□□□□ -0.12
YBX3-217ENST00000546164 TTC6Q86TZ1 520 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 R3HDMLQ9H3Y0 253 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 GINM1Q9NU53 330 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 SAP30BPQ9UHR5 308 aaKnown RBP14.33□□□□□ -0.12
YBX3-217ENST00000546164 ZHX2Q9Y6X8 837 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 SIPA1L1O43166 1804 aa14.33□□□□□ -0.12
YBX3-217ENST00000546164 MBD4O95243 580 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 CHGBP05060 677 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 ZFYP08048 801 aaPredicted RBP14.32□□□□□ -0.12
YBX3-217ENST00000546164 MOGSQ13724 837 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 SLFNL1Q499Z3 407 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 FAM43AQ8N2R8 423 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 CRACR2BQ8N4Y2 399 aaPredicted RBP14.32□□□□□ -0.12
YBX3-217ENST00000546164 ZNF296Q8WUU4 475 aaPredicted RBP14.32□□□□□ -0.12
YBX3-217ENST00000546164 TBC1D2Q9BYX2 928 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 ARMT1Q9H993 441 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 DCP1AQ9NPI6 582 aaPredicted RBP14.32□□□□□ -0.12
YBX3-217ENST00000546164 SERPINB13Q9UIV8 391 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 TAOK2Q9UL54 1235 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 AFG3L2Q9Y4W6 797 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 CASP8AP2Q9UKL3 1982 aa14.32□□□□□ -0.12
YBX3-217ENST00000546164 DOCK1Q14185 1865 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 A0A0G2JLL6 359 aaPredicted RBP14.31□□□□□ -0.12
YBX3-217ENST00000546164 BTBD19C9JJ37 291 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 ASNSP08243 561 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 PDE1AP54750 535 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 CRHR2Q13324 411 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 LRRFIP1Q32MZ4 808 aaKnown RBP14.31□□□□□ -0.12
YBX3-217ENST00000546164 IFFO2Q5TF58 517 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 PRRT2Q7Z6L0 340 aaPredicted RBP14.31□□□□□ -0.12
YBX3-217ENST00000546164 ANKRD23Q86SG2 305 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 SDR42E1Q8WUS8 393 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 APPBP2Q92624 585 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 PUS7LQ9H0K6 701 aaKnown RBP14.31□□□□□ -0.12
YBX3-217ENST00000546164 ATP8A2Q9NTI2 1148 aa14.31□□□□□ -0.12
YBX3-217ENST00000546164 DDX60LQ5H9U9 1706 aaKnown RBP14.31□□□□□ -0.12
YBX3-217ENST00000546164 RNF113AO15541 343 aaKnown RBP14.3□□□□□ -0.12
YBX3-217ENST00000546164 FKTNO75072 461 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 PLCD1P51178 756 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 NUCB1Q02818 461 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 GABPAQ06546 454 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 TAF1CQ15572 869 aaPredicted RBP14.3□□□□□ -0.12
YBX3-217ENST00000546164 TATDN1Q6P1N9 297 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 FASTKD5Q7L8L6 764 aaKnown RBP14.3□□□□□ -0.12
YBX3-217ENST00000546164 CHD1LQ86WJ1 897 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 TRIM34Q9BYJ4 488 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 LNPKQ9C0E8 428 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 ZFYVE28Q9HCC9 887 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 MCM9Q9NXL9 1143 aa14.3□□□□□ -0.12
YBX3-217ENST00000546164 MYH7P12883 1935 aa14.29□□□□□ -0.12
YBX3-217ENST00000546164 USP17L5A8MUK1 530 aa14.29□□□□□ -0.12
YBX3-217ENST00000546164 PRKAB2O43741 272 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms