RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 NAPBQ9H115 298 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 IL25Q9H293 177 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 ARMT1Q9H993 441 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 PTPN22Q9Y2R2 807 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 RBM8AQ9Y5S9 174 aaKnown RBP11.32□□□□□ -0.6
YBX3-215ENST00000544504 SLC4A4Q9Y6R1 1079 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 POLR2AP24928 1970 aaKnown RBP11.32□□□□□ -0.6
YBX3-215ENST00000544504 SCN9AQ15858 1988 aa11.32□□□□□ -0.6
YBX3-215ENST00000544504 MYH2Q9UKX2 1941 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 F8W031 263 aaPredicted RBP11.31□□□□□ -0.6
YBX3-215ENST00000544504 ANP32AP39687 249 aaKnown RBP11.31□□□□□ -0.6
YBX3-215ENST00000544504 CRKP46108 304 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 NECTIN1Q15223 517 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 DIXDC1Q155Q3 683 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 SLFNL1Q499Z3 407 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 ADGRA1Q86SQ6 560 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 LCORLQ8N3X6 602 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 ZDHHC15Q96MV8 337 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 GMLQ99445 158 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 AATFQ9NY61 560 aaKnown RBP eCLIP11.31□□□□□ -0.6
YBX3-215ENST00000544504 DAGLAQ9Y4D2 1042 aa11.31□□□□□ -0.6
YBX3-215ENST00000544504 MANSC4A6NHS7 340 aaPredicted RBP11.3□□□□□ -0.6
YBX3-215ENST00000544504 ZNF213O14771 459 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 CHGBP05060 677 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 PSMA5P28066 241 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 BTDP43251 543 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 USP5P45974 858 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 TDO2P48775 406 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 NT5C2P49902 561 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 RBM5P52756 815 aaKnown RBP eCLIP11.3□□□□□ -0.6
YBX3-215ENST00000544504 RABEP1Q15276 862 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 GRIK5Q16478 980 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 TSGA10IPQ3SY00 556 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 PRAMEF18Q5VWM3 479 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 SPRYD7Q5W111 196 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 CREB3L3Q68CJ9 461 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 ARMC9Q7Z3E5 817 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 MTMR14Q8NCE2 650 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 SLC17A8Q8NDX2 589 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 KCNB2Q92953 911 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 IL17RAQ96F46 866 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 ERO1AQ96HE7 468 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 TMEM106CQ9BVX2 250 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 TAOK2Q9UL54 1235 aa11.3□□□□□ -0.6
YBX3-215ENST00000544504 SCAF8Q9UPN6 1271 aaKnown RBP11.3□□□□□ -0.6
YBX3-215ENST00000544504 ZNF646O15015 1829 aaPredicted RBP11.3□□□□□ -0.6
YBX3-215ENST00000544504 LAMA3Q16787 3333 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 RBBP6Q7Z6E9 1792 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 GSG1L2A8MUP6 293 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 SLC27A2O14975 620 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 NPM3O75607 178 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 FGAP02671 866 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 SLC3A2P08195 630 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 HMGB1P09429 215 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 PCP11498 1178 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 DYNLL1P63167 89 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 DLGAP5Q15398 846 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 VPS53Q5VIR6 699 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 IFNL1Q8IU54 200 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 TEX11Q8IYF3 940 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 IFNL3Q8IZI9 196 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 OTUD5Q96G74 571 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 MXD3Q9BW11 206 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 TM6SF1Q9BZW5 370 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 TMOD2Q9NZR1 351 aa11.29□□□□□ -0.6
YBX3-215ENST00000544504 ARPP21Q9UBL0 812 aaPredicted RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 RBM19Q9Y4C8 960 aaKnown RBP11.29□□□□□ -0.6
YBX3-215ENST00000544504 H0YGN5 161 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 MYO1BO43795 1136 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 NBPF9Q3BBW0 867 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 CFAP100Q494V2 611 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 LDLRAD1Q5T700 205 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 RNF41Q9H4P4 317 aaPredicted RBP11.28□□□□□ -0.6
YBX3-215ENST00000544504 EFCC1Q9HA90 598 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 USP40Q9NVE5 1235 aa11.28□□□□□ -0.6
YBX3-215ENST00000544504 ZBTB48P10074 688 aaPredicted RBP11.27□□□□□ -0.61
YBX3-215ENST00000544504 RHBDL3P58872 404 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 TRDNQ13061 729 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 SBK1Q52WX2 424 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 FKBP1CQ5VVH2 108 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 APOBEC3HQ6NTF7 200 aaKnown RBP11.27□□□□□ -0.61
YBX3-215ENST00000544504 SH3RF3Q8TEJ3 882 aaPredicted RBP11.27□□□□□ -0.61
YBX3-215ENST00000544504 ZNF333Q96JL9 665 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 CNNM2Q9H8M5 875 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 ZNF287Q9HBT7 754 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 DCP1AQ9NPI6 582 aaPredicted RBP11.27□□□□□ -0.61
YBX3-215ENST00000544504 SNX14Q9Y5W7 946 aa11.27□□□□□ -0.61
YBX3-215ENST00000544504 SPDYE2BA6NHP3 402 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 WNT10BO00744 389 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 FOXP2O15409 715 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 PRKAB2O43741 272 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 ST18O60284 1047 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 CYP21A2P08686 494 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 SPDYE6P0CI01 402 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 MCM2P49736 904 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 PRKG1Q13976 671 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 BECN1Q14457 450 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 OTUD7BQ6GQQ9 843 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 CDC42EP5Q6NZY7 148 aa11.26□□□□□ -0.61
YBX3-215ENST00000544504 RALYLQ86SE5 291 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms