RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 STK3Q13188 491 aa35.82■■■■□ 3.32
CCM2-219ENST00000544363 FZD9O00144 591 aa35.81■■■■□ 3.32
CCM2-219ENST00000544363 PFKFB2O60825 505 aa35.81■■■■□ 3.32
CCM2-219ENST00000544363 GTF3C6Q969F1 213 aa35.81■■■■□ 3.32
CCM2-219ENST00000544363 IFIT3O14879 490 aaKnown RBP35.8■■■■□ 3.32
CCM2-219ENST00000544363 NT5C2P49902 561 aa35.8■■■■□ 3.32
CCM2-219ENST00000544363 SART3Q15020 963 aaKnown RBP35.8■■■■□ 3.32
CCM2-219ENST00000544363 TMEM67Q5HYA8 995 aa35.8■■■■□ 3.32
CCM2-219ENST00000544363 DYNLL2Q96FJ2 89 aa35.8■■■■□ 3.32
CCM2-219ENST00000544363 IDI2Q9BXS1 227 aa35.8■■■■□ 3.32
CCM2-219ENST00000544363 RANBP6O60518 1105 aaKnown RBP35.79■■■■□ 3.32
CCM2-219ENST00000544363 PDIA3P30101 505 aaKnown RBP35.79■■■■□ 3.32
CCM2-219ENST00000544363 PRMT6Q96LA8 375 aaPredicted RBP35.79■■■■□ 3.32
CCM2-219ENST00000544363 OSBPL5Q9H0X9 879 aaPredicted RBP35.79■■■■□ 3.32
CCM2-219ENST00000544363 LIFRP42702 1097 aa35.79■■■■□ 3.32
CCM2-219ENST00000544363 EIF6P56537 245 aaKnown RBP35.79■■■■□ 3.32
CCM2-219ENST00000544363 LY9Q9HBG7 655 aa35.79■■■■□ 3.32
CCM2-219ENST00000544363 BRPF3Q9ULD4 1205 aa35.79■■■■□ 3.32
CCM2-219ENST00000544363 NFIAQ12857 509 aa35.78■■■■□ 3.32
CCM2-219ENST00000544363 KLF18A0A0U1RQI7 1052 aa35.77■■■■□ 3.32
CCM2-219ENST00000544363 NPM3O75607 178 aaKnown RBP35.77■■■■□ 3.32
CCM2-219ENST00000544363 TTC6Q86TZ1 520 aa35.77■■■■□ 3.32
CCM2-219ENST00000544363 SGMS1Q86VZ5 419 aa35.77■■■■□ 3.32
CCM2-219ENST00000544363 UBAC1Q9BSL1 405 aa35.77■■■■□ 3.32
CCM2-219ENST00000544363 TDRD3Q9H7E2 651 aaKnown RBP35.77■■■■□ 3.32
CCM2-219ENST00000544363 NAP1L2Q9ULW6 460 aaPredicted RBP35.77■■■■□ 3.32
CCM2-219ENST00000544363 SMC3Q9UQE7 1217 aa35.77■■■■□ 3.32
CCM2-219ENST00000544363 ERICH2A1L162 156 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 SPDYE2BA6NHP3 402 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 SPDYE6P0CI01 402 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 RPS12P25398 132 aaKnown RBP35.76■■■■□ 3.32
CCM2-219ENST00000544363 DLGAP5Q15398 846 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 C16orf86Q6ZW13 317 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 ZKSCAN3Q9BRR0 538 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 ZNF287Q9HBT7 754 aa35.76■■■■□ 3.32
CCM2-219ENST00000544363 LMNB1P20700 586 aa35.75■■■■□ 3.31
CCM2-219ENST00000544363 MMP14P50281 582 aa35.75■■■■□ 3.31
CCM2-219ENST00000544363 SCRN1Q12765 414 aa35.75■■■■□ 3.31
CCM2-219ENST00000544363 MTMR14Q8NCE2 650 aa35.75■■■■□ 3.31
CCM2-219ENST00000544363 MKNK2Q9HBH9 465 aa35.75■■■■□ 3.31
CCM2-219ENST00000544363 CACNB3P54284 484 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 WTAPQ15007 396 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 IQCA1Q86XH1 822 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 TMTC2Q8N394 836 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 SENP2Q9HC62 589 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 FAM198AQ9UFP1 575 aa35.74■■■■□ 3.31
CCM2-219ENST00000544363 CHMP4CQ96CF2 233 aa35.73■■■■□ 3.31
CCM2-219ENST00000544363 ZSCAN10Q96SZ4 725 aaPredicted RBP35.73■■■■□ 3.31
CCM2-219ENST00000544363 CDK8P49336 464 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 NFXL1Q6ZNB6 911 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 GOLGA8BA8MQT2 603 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 SOCS7O14512 581 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 CCT2P78371 535 aaKnown RBP35.72■■■■□ 3.31
CCM2-219ENST00000544363 NUCB2P80303 420 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 SEC23AQ15436 765 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 FAM47AQ5JRC9 791 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 SLC44A5Q8NCS7 719 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 HPS5Q9UPZ3 1129 aa35.72■■■■□ 3.31
CCM2-219ENST00000544363 TNKSO95271 1327 aa35.71■■■■□ 3.31
CCM2-219ENST00000544363 CCDC69A6NI79 296 aa35.71■■■■□ 3.31
CCM2-219ENST00000544363 TSPY2A6NKD2 308 aa35.71■■■■□ 3.31
CCM2-219ENST00000544363 ZNF444Q8N0Y2 327 aaPredicted RBP35.71■■■■□ 3.31
CCM2-219ENST00000544363 DICER1Q9UPY3 1922 aaKnown RBP35.7■■■■□ 3.31
CCM2-219ENST00000544363 YBX3P16989 372 aaKnown RBP eCLIP35.7■■■■□ 3.312e-6■■□□□ 12.1
CCM2-219ENST00000544363 GJB2P29033 226 aa35.7■■■■□ 3.31
CCM2-219ENST00000544363 GABPAQ06546 454 aa35.7■■■■□ 3.31
CCM2-219ENST00000544363 APOA5Q6Q788 366 aa35.7■■■■□ 3.31
CCM2-219ENST00000544363 ZFPM1Q8IX07 1006 aa35.7■■■■□ 3.31
CCM2-219ENST00000544363 LLPHQ9BRT6 129 aaKnown RBP35.7■■■■□ 3.31
CCM2-219ENST00000544363 DHX36Q9H2U1 1008 aaKnown RBP35.7■■■■□ 3.31
CCM2-219ENST00000544363 TMOD2Q9NZR1 351 aa35.7■■■■□ 3.31
CCM2-219ENST00000544363 ENTPD3O75355 529 aa35.69■■■■□ 3.3
CCM2-219ENST00000544363 HLA-DOAP06340 250 aa35.69■■■■□ 3.3
CCM2-219ENST00000544363 TCP10Q12799 353 aa35.69■■■■□ 3.3
CCM2-219ENST00000544363 RAB3GAP1Q15042 981 aa35.69■■■■□ 3.3
CCM2-219ENST00000544363 ENAHQ8N8S7 591 aaPredicted RBP35.69■■■■□ 3.3
CCM2-219ENST00000544363 DPF2Q92785 391 aa35.69■■■■□ 3.3
CCM2-219ENST00000544363 ZBED3Q96IU2 234 aaPredicted RBP35.69■■■■□ 3.3
CCM2-219ENST00000544363 RASA1P20936 1047 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 ZNF280AP59817 542 aaPredicted RBP35.68■■■■□ 3.3
CCM2-219ENST00000544363 TFAP4Q01664 338 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 SLC12A7Q9Y666 1083 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 GJA3Q9Y6H8 435 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 ZNF541Q9H0D2 1346 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 GMPSP49915 693 aaPredicted RBP35.68■■■■□ 3.3
CCM2-219ENST00000544363 NCOA5Q9HCD5 579 aaKnown RBP35.68■■■■□ 3.3
CCM2-219ENST00000544363 MYOZ2Q9NPC6 264 aa35.68■■■■□ 3.3
CCM2-219ENST00000544363 ZNF70Q9UC06 446 aaPredicted RBP35.68■■■■□ 3.3
CCM2-219ENST00000544363 SBF1O95248 1867 aa35.67■■■■□ 3.3
CCM2-219ENST00000544363 SPDYE2Q495Y8 402 aa35.67■■■■□ 3.3
CCM2-219ENST00000544363 SERPINB13Q9UIV8 391 aa35.67■■■■□ 3.3
CCM2-219ENST00000544363 ZBTB43O43298 467 aa35.66■■■■□ 3.3
CCM2-219ENST00000544363 SYNE3Q6ZMZ3 975 aa35.66■■■■□ 3.3
CCM2-219ENST00000544363 EHD4Q9H223 541 aa35.66■■■■□ 3.3
CCM2-219ENST00000544363 SWAP70Q9UH65 585 aa35.66■■■■□ 3.3
CCM2-219ENST00000544363 SHTN1A0MZ66 631 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 DHX16O60231 1041 aaKnown RBP35.65■■■■□ 3.3
CCM2-219ENST00000544363 DTNBO60941 627 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 TSPY3P0CV98 308 aa35.65■■■■□ 3.3
CCM2-219ENST00000544363 TSPY8P0CW00 308 aa35.65■■■■□ 3.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms