RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CTAGE5O15320 804 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 SEC23AQ15436 765 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 TRIM22Q8IYM9 498 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 SPC24Q8NBT2 197 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 SDF4Q9BRK5 362 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 CCDC88AQ3V6T2 1871 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 A0A1W2PQ27 194 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 A0A1W2PQ64 194 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 A0A1W2PQD8 194 aa18.92■□□□□ 0.62
COL4A1-204ENST00000543140 DZIP1Q86YF9 867 aaKnown RBP18.92■□□□□ 0.62
COL4A1-204ENST00000543140 ZSCAN10Q96SZ4 725 aaPredicted RBP18.92■□□□□ 0.62
COL4A1-204ENST00000543140 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.92■□□□□ 0.62
COL4A1-204ENST00000543140 TTC12Q9H892 705 aaPredicted RBP18.92■□□□□ 0.62
COL4A1-204ENST00000543140 QTRT2Q9H974 415 aaKnown RBP18.92■□□□□ 0.62
COL4A1-204ENST00000543140 STK36Q9NRP7 1315 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 IRS2Q9Y4H2 1338 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 WDHD1O75717 1129 aaPredicted RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 CYP2D6P10635 497 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 C11orf57Q6ZUT1 292 aaPredicted RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 NBPF11Q86T75 865 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 CRACR2BQ8N4Y2 399 aaPredicted RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 CERKQ8TCT0 537 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 CRNKL1Q9BZJ0 848 aaKnown RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 DCP1AQ9NPI6 582 aaPredicted RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 PDS5AQ29RF7 1337 aaKnown RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 BTBD18B2RXH4 712 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 SLC39A14Q15043 492 aa18.91■□□□□ 0.62
COL4A1-204ENST00000543140 RPGRQ92834 1020 aaKnown RBP18.91■□□□□ 0.62
COL4A1-204ENST00000543140 DUOX1Q9NRD9 1551 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 ZNF500O60304 480 aaPredicted RBP18.9■□□□□ 0.62
COL4A1-204ENST00000543140 GYS1P13807 737 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 U2AF2P26368 475 aaKnown RBP eCLIP18.9■□□□□ 0.62
COL4A1-204ENST00000543140 AXDND1Q5T1B0 1012 aaPredicted RBP18.9■□□□□ 0.62
COL4A1-204ENST00000543140 WASF1Q92558 559 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 MTA3Q9BTC8 594 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 NID2Q14112 1375 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 CCDC196A0A1B0GTZ2 297 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 TRIM37O94972 964 aa18.9■□□□□ 0.62
COL4A1-204ENST00000543140 IFIT1BQ5T764 474 aaKnown RBP18.9■□□□□ 0.62
COL4A1-204ENST00000543140 MYH6P13533 1939 aa18.89■□□□□ 0.62
COL4A1-204ENST00000543140 NMT2O60551 498 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 FAM47AQ5JRC9 791 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 RGS22Q8NE09 1264 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 MROH7-TTC4A0A0A0MT08 1334 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 hCG_1642624A0A1W2PR95 340 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 PRKCSHP14314 528 aaPredicted RBP18.89■□□□□ 0.61
COL4A1-204ENST00000543140 GRIK5Q16478 980 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 STX1AQ16623 288 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 UBR3Q6ZT12 1888 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 IQCA1Q86XH1 822 aa18.89■□□□□ 0.61
COL4A1-204ENST00000543140 XDHP47989 1333 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 MMP1P03956 469 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 SERPINB2P05120 415 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 ADRA2BP18089 450 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 DIS3L2Q8IYB7 885 aaKnown RBP18.88■□□□□ 0.61
COL4A1-204ENST00000543140 MAP3K14Q99558 947 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 LEMD3Q9Y2U8 911 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 ZNF202O95125 648 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 DEXIO95424 95 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 PFKFB1P16118 471 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 GPSM2P81274 684 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 PTPAQ15257 358 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 DIXDC1Q155Q3 683 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 NOSTRINQ8IVI9 506 aa18.88■□□□□ 0.61
COL4A1-204ENST00000543140 BAZ2BQ9UIF8 2168 aaKnown RBP18.87■□□□□ 0.61
COL4A1-204ENST00000543140 LDHBP07195 334 aaKnown RBP18.87■□□□□ 0.61
COL4A1-204ENST00000543140 SAFBQ15424 915 aaKnown RBP eCLIP18.87■□□□□ 0.61
COL4A1-204ENST00000543140 SPTY2D1Q68D10 685 aaPredicted RBP18.87■□□□□ 0.61
COL4A1-204ENST00000543140 TDRD7Q8NHU6 1098 aaKnown RBP18.87■□□□□ 0.61
COL4A1-204ENST00000543140 CLIC6Q96NY7 704 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 TRIM5Q9C035 493 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 ATP8A2Q9NTI2 1148 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 MCM9Q9NXL9 1143 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 FGRP09769 529 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 USP17L8P0C7I0 530 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 CMA1P23946 247 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 NR5A1Q13285 461 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 CATIPQ7Z7H3 387 aa18.87■□□□□ 0.61
COL4A1-204ENST00000543140 IQCB1Q15051 598 aa18.86■□□□□ 0.61
COL4A1-204ENST00000543140 PLEKHA8P1O95397 391 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 RCAN1P53805 252 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 ST5P78524 1137 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 WDR66Q8TBY9 1149 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 OXER1Q8TDS5 423 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.85■□□□□ 0.61
COL4A1-204ENST00000543140 OFD1O75665 1012 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 UFL1O94874 794 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 SHC4Q6S5L8 630 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 ZNF804AQ7Z570 1209 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 ANO10Q9NW15 660 aa18.85■□□□□ 0.61
COL4A1-204ENST00000543140 GOLGA6L19H0YKK7 550 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 CAVIN2O95810 425 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 ATP2B1P20020 1258 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 TOB1P50616 345 aaPredicted RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 AKAP17AQ02040 695 aaKnown RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 C17orf53Q8N3J3 647 aaPredicted RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 SH3RF3Q8TEJ3 882 aaPredicted RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 V9GY48 417 aaPredicted RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 BIN1O00499 593 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 PPP6R2O75170 966 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms