RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.04■□□□□ 0.64
RTN3-211ENST00000542238 RARSP54136 660 aaKnown RBP19.03■□□□□ 0.64
RTN3-211ENST00000542238 SPP2Q13103 211 aa19.03■□□□□ 0.64
RTN3-211ENST00000542238 PABPC4Q13310 644 aaKnown RBP eCLIP19.03■□□□□ 0.64
RTN3-211ENST00000542238 FAM110CQ1W6H9 321 aa19.03■□□□□ 0.64
RTN3-211ENST00000542238 CCDC84Q86UT8 332 aaPredicted RBP19.03■□□□□ 0.64
RTN3-211ENST00000542238 DEFB118Q96PH6 123 aa19.03■□□□□ 0.64
RTN3-211ENST00000542238 RAI14Q9P0K7 980 aa19.03■□□□□ 0.64
RTN3-211ENST00000542238 LOC285556D6RIA3 1793 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 FAM196BA6NMK8 535 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 EVI5O60447 810 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 GCLCP48506 637 aaPredicted RBP19.02■□□□□ 0.64
RTN3-211ENST00000542238 TREML2Q5T2D2 321 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 ZNF280CQ8ND82 737 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 ZNF384Q8TF68 577 aa19.02■□□□□ 0.64
RTN3-211ENST00000542238 NSUN4Q96CB9 384 aaKnown RBP19.02■□□□□ 0.64
RTN3-211ENST00000542238 NOL10Q9BSC4 688 aaKnown RBP19.02■□□□□ 0.64
RTN3-211ENST00000542238 COL2A1P02458 1487 aaPredicted RBP19.02■□□□□ 0.63
RTN3-211ENST00000542238 ZBTB7BO15156 539 aaPredicted RBP19.01■□□□□ 0.63
RTN3-211ENST00000542238 G3BP1Q13283 466 aaKnown RBP eCLIP19.01■□□□□ 0.63
RTN3-211ENST00000542238 TBC1D9Q6ZT07 1266 aa19.01■□□□□ 0.63
RTN3-211ENST00000542238 LRP2BPQ9P2M1 347 aa19.01■□□□□ 0.63
RTN3-211ENST00000542238 USP17L5A8MUK1 530 aa19■□□□□ 0.63
RTN3-211ENST00000542238 IPO8O15397 1037 aaKnown RBP19■□□□□ 0.63
RTN3-211ENST00000542238 UQCRFS1P1P0C7P4 283 aa19■□□□□ 0.63
RTN3-211ENST00000542238 ARID4AP29374 1257 aaPredicted RBP19■□□□□ 0.63
RTN3-211ENST00000542238 CAP2P40123 477 aa19■□□□□ 0.63
RTN3-211ENST00000542238 HMGCS2P54868 508 aa19■□□□□ 0.63
RTN3-211ENST00000542238 PI16Q6UXB8 463 aa19■□□□□ 0.63
RTN3-211ENST00000542238 TEX11Q8IYF3 940 aa19■□□□□ 0.63
RTN3-211ENST00000542238 AS3MTQ9HBK9 375 aa19■□□□□ 0.63
RTN3-211ENST00000542238 PAK6Q9NQU5 681 aaPredicted RBP19■□□□□ 0.63
RTN3-211ENST00000542238 HERC5Q9UII4 1024 aaKnown RBP19■□□□□ 0.63
RTN3-211ENST00000542238 GNAI2P04899 355 aa18.99■□□□□ 0.63
RTN3-211ENST00000542238 BAG3O95817 575 aa18.98■□□□□ 0.63
RTN3-211ENST00000542238 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.98■□□□□ 0.63
RTN3-211ENST00000542238 DHX36Q9H2U1 1008 aaKnown RBP18.98■□□□□ 0.63
RTN3-211ENST00000542238 PRO3102Q9H379 93 aa18.98■□□□□ 0.63
RTN3-211ENST00000542238 PI4KBQ9UBF8 816 aa18.98■□□□□ 0.63
RTN3-211ENST00000542238 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.98■□□□□ 0.63
RTN3-211ENST00000542238 A0A1W2PPC1 479 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 HMGCRP04035 888 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 PLCG2P16885 1265 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 MCAMP43121 646 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 NECAB2Q7Z6G3 386 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 CRISPLD2Q9H0B8 497 aa18.97■□□□□ 0.63
RTN3-211ENST00000542238 ASCC2Q9H1I8 757 aaPredicted RBP18.97■□□□□ 0.63
RTN3-211ENST00000542238 RANBP2P49792 3224 aaKnown RBP18.97■□□□□ 0.63
RTN3-211ENST00000542238 SH3D19Q5HYK7 790 aa18.96■□□□□ 0.63
RTN3-211ENST00000542238 NAA16Q6N069 864 aaPredicted RBP18.96■□□□□ 0.63
RTN3-211ENST00000542238 SH3RF3Q8TEJ3 882 aaPredicted RBP18.96■□□□□ 0.63
RTN3-211ENST00000542238 PAWRQ96IZ0 340 aaKnown RBP18.96■□□□□ 0.63
RTN3-211ENST00000542238 TRIM34Q9BYJ4 488 aa18.96■□□□□ 0.63
RTN3-211ENST00000542238 SZT2Q5T011 3432 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 ASNSP08243 561 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 IRX3P78415 501 aaPredicted RBP18.95■□□□□ 0.62
RTN3-211ENST00000542238 ANKLE1Q8NAG6 615 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 FRAT1Q92837 279 aaPredicted RBP18.95■□□□□ 0.62
RTN3-211ENST00000542238 HMX1Q9NP08 348 aaPredicted RBP18.95■□□□□ 0.62
RTN3-211ENST00000542238 TMOD4Q9NZQ9 345 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 MAST2Q6P0Q8 1798 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 RPTORQ8N122 1335 aa18.95■□□□□ 0.62
RTN3-211ENST00000542238 ALPK3Q96L96 1907 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 PNMA6EA0A0J9YXQ4 647 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 TRIM27P14373 513 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 RRP1BQ14684 758 aaKnown RBP18.94■□□□□ 0.62
RTN3-211ENST00000542238 CCDC158Q5M9N0 1113 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 TTC39AQ5SRH9 613 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 ATF7IPQ6VMQ6 1270 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 WDR18Q9BV38 432 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 AATFQ9NY61 560 aaKnown RBP eCLIP18.94■□□□□ 0.62
RTN3-211ENST00000542238 GJD2Q9UKL4 321 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 CDK5RAP2Q96SN8 1893 aa18.94■□□□□ 0.62
RTN3-211ENST00000542238 BACE1P56817 501 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 MTMR2Q13614 643 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 FOXP4Q8IVH2 680 aaPredicted RBP18.93■□□□□ 0.62
RTN3-211ENST00000542238 CRACR2BQ8N4Y2 399 aaPredicted RBP18.93■□□□□ 0.62
RTN3-211ENST00000542238 TGFBRAP1Q8WUH2 860 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 SNRKQ9NRH2 765 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 MORF4L1Q9UBU8 362 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 SIPA1L1O43166 1804 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 FOCADQ5VW36 1801 aa18.93■□□□□ 0.62
RTN3-211ENST00000542238 C19orf81C9J6K1 198 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 OS9Q13438 667 aaPredicted RBP18.92■□□□□ 0.62
RTN3-211ENST00000542238 MAPKAPK5Q8IW41 473 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 DIS3LQ8TF46 1054 aaKnown RBP18.92■□□□□ 0.62
RTN3-211ENST00000542238 CLUAP1Q96AJ1 413 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 GPR108Q9NPR9 543 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 GINM1Q9NU53 330 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 STAP2Q9UGK3 403 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 PLXNB2O15031 1838 aa18.92■□□□□ 0.62
RTN3-211ENST00000542238 HOXA7P31268 230 aaPredicted RBP18.91■□□□□ 0.62
RTN3-211ENST00000542238 PPP4CP60510 307 aa18.91■□□□□ 0.62
RTN3-211ENST00000542238 TNNI3KQ59H18 835 aa18.91■□□□□ 0.62
RTN3-211ENST00000542238 GPRC5AQ8NFJ5 357 aa18.91■□□□□ 0.62
RTN3-211ENST00000542238 P2RX7Q99572 595 aaKnown RBP18.91■□□□□ 0.62
RTN3-211ENST00000542238 NBPF3Q9H094 633 aa18.91■□□□□ 0.62
RTN3-211ENST00000542238 FPGT-TNNI3KV9GXZ4 949 aa18.91■□□□□ 0.62
RTN3-211ENST00000542238 MYO5AQ9Y4I1 1855 aaKnown RBP18.9■□□□□ 0.62
RTN3-211ENST00000542238 USP17L10C9JJH3 530 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms