RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	32.88	■■■□□ 2.85
CCM2-218	ENST00000541586	SLC4A8	Q2Y0W8	1093 aa		32.87	■■■□□ 2.85
CCM2-218	ENST00000541586	FKBP1C	Q5VVH2	108 aa		32.87	■■■□□ 2.85
CCM2-218	ENST00000541586	FOXD4L1	Q9NU39	408 aa		32.87	■■■□□ 2.85
CCM2-218	ENST00000541586	SAP30BP	Q9UHR5	308 aa	Known RBP	32.87	■■■□□ 2.85
CCM2-218	ENST00000541586	FLT1	P17948	1338 aa		32.87	■■■□□ 2.85
CCM2-218	ENST00000541586	HMGB1	P09429	215 aa	Known RBP	32.86	■■■□□ 2.85
CCM2-218	ENST00000541586	TCEANC2	Q96MN5	208 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	NBPF3	Q9H094	633 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	LAMA4	Q16363	1823 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	ECM29	Q5VYK3	1845 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	TDO2	P48775	406 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	FAM83A	Q86UY5	434 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	FAM151A	Q8WW52	585 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	DCP1A	Q9NPI6	582 aa	Predicted RBP	32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	LIMCH1	Q9UPQ0	1083 aa		32.85	■■■□□ 2.85
CCM2-218	ENST00000541586	CNTNAP1	P78357	1384 aa		32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	TOMM70	O94826	608 aa		32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	LARP6	Q9BRS8	491 aa	Known RBP	32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	OSBPL5	Q9H0X9	879 aa	Predicted RBP	32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	ATP8A2	Q9NTI2	1148 aa		32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	MCM9	Q9NXL9	1143 aa		32.84	■■■□□ 2.85
CCM2-218	ENST00000541586	ENTPD3	O75355	529 aa		32.83	■■■□□ 2.85
CCM2-218	ENST00000541586	CDAN1	Q8IWY9	1227 aa		32.82	■■■□□ 2.85
CCM2-218	ENST00000541586	TRAF5	O00463	557 aa		32.82	■■■□□ 2.84
CCM2-218	ENST00000541586	DDIT3	P35638	169 aa		32.82	■■■□□ 2.84
CCM2-218	ENST00000541586	FMR1	Q06787	632 aa	Known RBP eCLIP	32.82	■■■□□ 2.84	8e-10	■■■■■ 77.9
CCM2-218	ENST00000541586	CUL4A	Q13619	759 aa		32.82	■■■□□ 2.84
CCM2-218	ENST00000541586	DHX32	Q7L7V1	743 aa	Known RBP	32.82	■■■□□ 2.84
CCM2-218	ENST00000541586	TBC1D10C	Q8IV04	446 aa		32.82	■■■□□ 2.84
CCM2-218	ENST00000541586	DDTL	A6NHG4	134 aa	Predicted RBP	32.81	■■■□□ 2.84
CCM2-218	ENST00000541586	POLR3D	P05423	398 aa	Predicted RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	TOB2	Q14106	344 aa	Predicted RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	ANKRD1	Q15327	319 aa		32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	SMC1B	Q8NDV3	1235 aa		32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	MKRN1	Q9UHC7	482 aa	Known RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	NPM3	O75607	178 aa	Known RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	EXOSC10	Q01780	885 aa	Known RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	NBPF12	Q5TAG4	269 aa	Predicted RBP	32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	SH3BP5L	Q7L8J4	393 aa		32.8	■■■□□ 2.84
CCM2-218	ENST00000541586	GIMAP6	Q6P9H5	292 aa		32.79	■■■□□ 2.84
CCM2-218	ENST00000541586	NCOA7	Q8NI08	942 aa		32.78	■■■□□ 2.84
CCM2-218	ENST00000541586	TEPSIN	Q96N21	525 aa		32.78	■■■□□ 2.84
CCM2-218	ENST00000541586	CSRNP1	Q96S65	589 aa		32.78	■■■□□ 2.84
CCM2-218	ENST00000541586	ZNF408	Q9H9D4	720 aa		32.78	■■■□□ 2.84
CCM2-218	ENST00000541586	PPP2R3B	Q9Y5P8	575 aa		32.78	■■■□□ 2.84
CCM2-218	ENST00000541586	USP17L12	C9JPN9	530 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	USP17L21	D6R901	530 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586		Q6ZUG5	572 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	RBM46	Q8TBY0	533 aa	Known RBP	32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	CDCA5	Q96FF9	252 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	CDK5RAP2	Q96SN8	1893 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	CTDSPL2	Q05D32	466 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	MB21D2	Q8IYB1	491 aa	Predicted RBP	32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	ZSCAN31	Q96LW9	406 aa	Predicted RBP	32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	LRRC2	Q9BYS8	371 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	TPCN1	Q9ULQ1	816 aa		32.77	■■■□□ 2.84
CCM2-218	ENST00000541586	CYP2D7	A0A087X1C5	515 aa		32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	MINDY4B	A8MYZ0	360 aa		32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	LARGE1	O95461	756 aa		32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	ITGBL1	O95965	494 aa	Predicted RBP	32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	CTR9	Q6PD62	1173 aa		32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	RALYL	Q86SE5	291 aa	Known RBP	32.76	■■■□□ 2.83
CCM2-218	ENST00000541586	CYP2D6	P10635	497 aa		32.75	■■■□□ 2.83
CCM2-218	ENST00000541586	MIGA2	Q7L4E1	593 aa		32.75	■■■□□ 2.83
CCM2-218	ENST00000541586	DHX36	Q9H2U1	1008 aa	Known RBP	32.75	■■■□□ 2.83
CCM2-218	ENST00000541586	CHMP5	Q9NZZ3	219 aa		32.75	■■■□□ 2.83
CCM2-218	ENST00000541586	PLCD1	P51178	756 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	EVX2	Q03828	476 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	TRDN	Q13061	729 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	PRKG1	Q13976	671 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	AMOTL1	Q8IY63	956 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	STK11IP	Q8N1F8	1099 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	INTS4	Q96HW7	963 aa	Known RBP	32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	SH2B1	Q9NRF2	756 aa	Predicted RBP	32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	HLA-DOA	P06340	250 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	SLURP2	P0DP57	97 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	PPARA	Q07869	468 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	SUPT20HL1	Q3ZLR7	823 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	CHST3	Q7LGC8	479 aa		32.74	■■■□□ 2.83
CCM2-218	ENST00000541586	ME3	Q16798	604 aa		32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	TTC6	Q86TZ1	520 aa		32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	PI4KB	Q9UBF8	816 aa		32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	ANAPC4	Q9UJX5	808 aa		32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	FZD1	Q9UP38	647 aa		32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	BAZ2A	Q9UIF9	1905 aa	Known RBP	32.73	■■■□□ 2.83
CCM2-218	ENST00000541586	NEDD4	P46934	1319 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	MCM5	P33992	734 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	FGD1	P98174	961 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	AKNAD1	Q5T1N1	836 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	AGXT2	Q9BYV1	514 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	TACC3	Q9Y6A5	838 aa		32.72	■■■□□ 2.83
CCM2-218	ENST00000541586	SMIM22	K7EJ46	135 aa		32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	STAG1	Q8WVM7	1258 aa		32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	CWC22	Q9HCG8	908 aa	Known RBP	32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	INCENP	Q9NQS7	918 aa		32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	ARPP21	Q9UBL0	812 aa	Predicted RBP	32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	CIZ1	Q9ULV3	898 aa	Predicted RBP	32.71	■■■□□ 2.83
CCM2-218	ENST00000541586	FOCAD	Q5VW36	1801 aa		32.71	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms