RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 HMX1Q9NP08 348 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-216ENST00000541416 DDX4Q9NQI0 724 aaKnown RBP15.15■□□□□ 0.02
SNHG1-216ENST00000541416 PA2G4Q9UQ80 394 aaKnown RBP15.15■□□□□ 0.02
SNHG1-216ENST00000541416 A0A0C4DFX4 3053 aa15.15■□□□□ 0.02
SNHG1-216ENST00000541416 A0A1B0GUL7 405 aa15.14■□□□□ 0.01
SNHG1-216ENST00000541416 MECOMQ03112 1051 aa15.14■□□□□ 0.01
SNHG1-216ENST00000541416 SPP2Q13103 211 aa15.14■□□□□ 0.01
SNHG1-216ENST00000541416 XAGE2Q96GT9 111 aa15.14■□□□□ 0.01
SNHG1-216ENST00000541416 HERC5Q9UII4 1024 aaKnown RBP15.14■□□□□ 0.01
SNHG1-216ENST00000541416 PHIPQ8WWQ0 1821 aa15.14■□□□□ 0.01
SNHG1-216ENST00000541416 COL2A1P02458 1487 aaPredicted RBP15.14■□□□□ 0.01
SNHG1-216ENST00000541416 USP17L5A8MUK1 530 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 GNAI3P08754 354 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 TREML2Q5T2D2 321 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 NEUROD6Q96NK8 337 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 NBPF3Q9H094 633 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 STAP2Q9UGK3 403 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 NOB1Q9ULX3 412 aaKnown RBP15.13■□□□□ 0.01
SNHG1-216ENST00000541416 RPTORQ8N122 1335 aa15.13■□□□□ 0.01
SNHG1-216ENST00000541416 SRGAP3O43295 1099 aa15.12■□□□□ 0.01
SNHG1-216ENST00000541416 HMGCS2P54868 508 aa15.12■□□□□ 0.01
SNHG1-216ENST00000541416 RHBDL3P58872 404 aa15.12■□□□□ 0.01
SNHG1-216ENST00000541416 IRX3P78415 501 aaPredicted RBP15.12■□□□□ 0.01
SNHG1-216ENST00000541416 RAI14Q9P0K7 980 aa15.12■□□□□ 0.01
SNHG1-216ENST00000541416 LAMA3Q16787 3333 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 DLL1O00548 723 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 PLCG2P16885 1265 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 BMP8BP34820 402 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 CAP2P40123 477 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 TFCP2Q12800 502 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 GPR153Q6NV75 609 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 CCDC84Q86UT8 332 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-216ENST00000541416 CCAR1Q8IX12 1150 aaKnown RBP15.11■□□□□ 0.01
SNHG1-216ENST00000541416 TRMT44Q8IYL2 757 aaKnown RBP15.11■□□□□ 0.01
SNHG1-216ENST00000541416 C7orf61Q8IZ16 206 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 SPATA5Q8NB90 893 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 SOCS4Q8WXH5 440 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 TRIM34Q9BYJ4 488 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 ASCC2Q9H1I8 757 aaPredicted RBP15.11■□□□□ 0.01
SNHG1-216ENST00000541416 DHX36Q9H2U1 1008 aaKnown RBP15.11■□□□□ 0.01
SNHG1-216ENST00000541416 TMOD4Q9NZQ9 345 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 PI4KBQ9UBF8 816 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 LOC285556D6RIA3 1793 aa15.11■□□□□ 0.01
SNHG1-216ENST00000541416 FAM196BA6NMK8 535 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 BAG3O95817 575 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 ASNSP08243 561 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 SH3D19Q5HYK7 790 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 TEX11Q8IYF3 940 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 NSUN4Q96CB9 384 aaKnown RBP15.1■□□□□ 0.01
SNHG1-216ENST00000541416 MEIS3Q99687 375 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 LRP2BPQ9P2M1 347 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.1■□□□□ 0.01
SNHG1-216ENST00000541416 DOCK3Q8IZD9 2030 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 ATAD5Q96QE3 1844 aa15.1■□□□□ 0.01
SNHG1-216ENST00000541416 UQCRFS1P1P0C7P4 283 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 PDE3AQ14432 1141 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 GTF3C2Q8WUA4 911 aaPredicted RBP15.09■□□□□ 0.01
SNHG1-216ENST00000541416 GDF15Q99988 308 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 NUDT12Q9BQG2 462 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 WDR18Q9BV38 432 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 C11orf49Q9H6J7 331 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 GINM1Q9NU53 330 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 HMG20BQ9P0W2 317 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 MORF4L1Q9UBU8 362 aa15.09■□□□□ 0.01
SNHG1-216ENST00000541416 C19orf81C9J6K1 198 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 SLURP2P0DP57 97 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 ARID4AP29374 1257 aaPredicted RBP15.08■□□□□ 0
SNHG1-216ENST00000541416 G3BP1Q13283 466 aaKnown RBP eCLIP15.08■□□□□ 0
SNHG1-216ENST00000541416 MTX1Q13505 466 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 ATF7IPQ6VMQ6 1270 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 CRACR2BQ8N4Y2 399 aaPredicted RBP15.08■□□□□ 0
SNHG1-216ENST00000541416 GPRC5AQ8NFJ5 357 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 DIS3LQ8TF46 1054 aaKnown RBP15.08■□□□□ 0
SNHG1-216ENST00000541416 GJD2Q9UKL4 321 aa15.08■□□□□ 0
SNHG1-216ENST00000541416 IGSF3O75054 1194 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 XRCC5P13010 732 aaKnown RBP15.07■□□□□ 0
SNHG1-216ENST00000541416 MAPK4P31152 587 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 HOXA7P31268 230 aaPredicted RBP15.07■□□□□ 0
SNHG1-216ENST00000541416 BACE1P56817 501 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 MTMR2Q13614 643 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 NAA16Q6N069 864 aaPredicted RBP15.07■□□□□ 0
SNHG1-216ENST00000541416 ARHGAP45Q92619 1136 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 LRCH3Q96II8 777 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 CWC22Q9HCG8 908 aaKnown RBP15.07■□□□□ 0
SNHG1-216ENST00000541416 OGDHLQ9ULD0 1010 aa15.07■□□□□ 0
SNHG1-216ENST00000541416 ZMYND8Q9ULU4 1186 aaPredicted RBP15.07■□□□□ 0
SNHG1-216ENST00000541416 USP17L10C9JJH3 530 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 SOX1O00570 391 aaPredicted RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 IPO8O15397 1037 aaKnown RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 PRKAR2AP13861 404 aaKnown RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 ZKSCAN1P17029 563 aaPredicted RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 CYP2B6P20813 491 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 HERVK_113P62684 666 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 TBC1D9Q6ZT07 1266 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 FOXP4Q8IVH2 680 aaPredicted RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 TRMT2AQ8IZ69 625 aaKnown RBP15.06■□□□□ 0
SNHG1-216ENST00000541416 TDHQ8IZJ6 230 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 CDCA7LQ96GN5 454 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 DNAH12Q6ZR08 3092 aa15.06■□□□□ 0
SNHG1-216ENST00000541416 GNAI2P04899 355 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms