RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SNAPC2Q13487 334 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 RRP1BQ14684 758 aaKnown RBP17.24■□□□□ 0.35
USP28-209ENST00000540925 SLC9C2Q5TAH2 1124 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 MAPKAPK5Q8IW41 473 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 FAM43AQ8N2R8 423 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 MCOLN1Q9GZU1 580 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 ZCCHC17Q9NP64 241 aaKnown RBP17.24■□□□□ 0.35
USP28-209ENST00000540925 ECHDC1Q9NTX5 307 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 PI4KBQ9UBF8 816 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 HERC5Q9UII4 1024 aaKnown RBP17.24■□□□□ 0.35
USP28-209ENST00000540925 ZNF532Q9HCE3 1301 aa17.23■□□□□ 0.35
USP28-209ENST00000540925 BTBD19C9JJ37 291 aa17.23■□□□□ 0.35
USP28-209ENST00000540925 OTUD7BQ6GQQ9 843 aa17.23■□□□□ 0.35
USP28-209ENST00000540925 AFG3L2Q9Y4W6 797 aa17.23■□□□□ 0.35
USP28-209ENST00000540925 SALL3Q9BXA9 1300 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 PTPRFP10586 1907 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 CCDC85CA6NKD9 419 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 CXCL11O14625 94 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 ADD2P35612 726 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.22■□□□□ 0.35
USP28-209ENST00000540925 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
USP28-209ENST00000540925 FKTNO75072 461 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 DGKZQ13574 1117 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 CTU1Q7Z7A3 348 aaKnown RBP17.21■□□□□ 0.35
USP28-209ENST00000540925 FOXP4Q8IVH2 680 aaPredicted RBP17.21■□□□□ 0.35
USP28-209ENST00000540925 BCL11AQ9H165 835 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.21■□□□□ 0.35
USP28-209ENST00000540925 PDE4DIPQ5VU43 2346 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 MYH1P12882 1939 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 MYH7P12883 1935 aa17.21■□□□□ 0.35
USP28-209ENST00000540925 CENPFP49454 3210 aa17.21■□□□□ 0.34
USP28-209ENST00000540925 ATAD5Q96QE3 1844 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 A0A0G2JLL6 359 aaPredicted RBP17.2■□□□□ 0.34
USP28-209ENST00000540925 MAGEB6P1A0A0J9YX57 407 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 CHGBP05060 677 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 CAP2P40123 477 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 UBE3CQ15386 1083 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 SLFNL1Q499Z3 407 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 TSHZ3Q63HK5 1081 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 PRRT2Q7Z6L0 340 aaPredicted RBP17.2■□□□□ 0.34
USP28-209ENST00000540925 ANKRD23Q86SG2 305 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 PI4K2BQ8TCG2 481 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 OTUD7AQ8TE49 926 aaPredicted RBP17.2■□□□□ 0.34
USP28-209ENST00000540925 PICK1Q9NRD5 415 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 ZHX2Q9Y6X8 837 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 TTC41PQ6P2S7 1318 aa17.2■□□□□ 0.34
USP28-209ENST00000540925 JAG1P78504 1218 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 CAP1Q01518 475 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 GPAT2Q6NUI2 795 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 LCORLQ8N3X6 602 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 GCC1Q96CN9 775 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 EHD4Q9H223 541 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 SAP30BPQ9UHR5 308 aaKnown RBP17.19■□□□□ 0.34
USP28-209ENST00000540925 ADGRA2Q96PE1 1338 aa17.19■□□□□ 0.34
USP28-209ENST00000540925 TAF1CQ15572 869 aaPredicted RBP17.18■□□□□ 0.34
USP28-209ENST00000540925 EXOC6Q8TAG9 804 aa17.18■□□□□ 0.34
USP28-209ENST00000540925 GPATCH3Q96I76 525 aa17.18■□□□□ 0.34
USP28-209ENST00000540925 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP28-209ENST00000540925 NAV1Q8NEY1 1877 aa17.18■□□□□ 0.34
USP28-209ENST00000540925 TLR2O60603 784 aa17.17■□□□□ 0.34
USP28-209ENST00000540925 USP5P45974 858 aa17.17■□□□□ 0.34
USP28-209ENST00000540925 TATDN1Q6P1N9 297 aa17.17■□□□□ 0.34
USP28-209ENST00000540925 CCDC84Q86UT8 332 aaPredicted RBP17.17■□□□□ 0.34
USP28-209ENST00000540925 KBTBD3Q8NAB2 608 aa17.17■□□□□ 0.34
USP28-209ENST00000540925 CRNKL1Q9BZJ0 848 aaKnown RBP17.17■□□□□ 0.34
USP28-209ENST00000540925 ZFYVE28Q9HCC9 887 aa17.17■□□□□ 0.34
USP28-209ENST00000540925 SUPT16HQ9Y5B9 1047 aaKnown RBP17.17■□□□□ 0.34
USP28-209ENST00000540925 LOC285556D6RIA3 1793 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 HLA-DOAP06340 250 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 PLCD1P51178 756 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 GABPAQ06546 454 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 SHROOM1Q2M3G4 852 aaPredicted RBP17.16■□□□□ 0.34
USP28-209ENST00000540925 SMC5Q8IY18 1101 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 TBC1D2Q9BYX2 928 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 ARMT1Q9H993 441 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 DCP1AQ9NPI6 582 aaPredicted RBP17.16■□□□□ 0.34
USP28-209ENST00000540925 GINM1Q9NU53 330 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 SLC45A1Q9Y2W3 748 aa17.16■□□□□ 0.34
USP28-209ENST00000540925 PDHXO00330 501 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 MBD4O95243 580 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 MX1P20591 662 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 SP3Q02447 781 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 EVX2Q03828 476 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 PKN2Q16513 984 aaKnown RBP17.15■□□□□ 0.34
USP28-209ENST00000540925 ZSCAN25Q6NSZ9 544 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 C17orf99Q6UX52 265 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 SDR42E1Q8WUS8 393 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 WDR18Q9BV38 432 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 PUS7LQ9H0K6 701 aaKnown RBP17.15■□□□□ 0.34
USP28-209ENST00000540925 STAP2Q9UGK3 403 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 SERPINB13Q9UIV8 391 aa17.15■□□□□ 0.34
USP28-209ENST00000540925 TRIM75PA6NK02 468 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 USP17L5A8MUK1 530 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 PRKAB2O43741 272 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 GLRX3O76003 335 aaKnown RBP17.14■□□□□ 0.33
USP28-209ENST00000540925 ASNSP08243 561 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 SHMT1P34896 483 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 SLC4A8Q2Y0W8 1093 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 SH3D19Q5HYK7 790 aa17.14■□□□□ 0.33
USP28-209ENST00000540925 FASTKD5Q7L8L6 764 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms