RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 USP54Q70EL1 1684 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 MAP2P11137 1827 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 NDUFAB1O14561 156 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 RHOXF2BP0C7M4 288 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 FBLN1P23142 703 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 CDC25CP30307 473 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 TMEM62Q0P6H9 643 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 MKRN4PQ13434 485 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 SPATS2Q86XZ4 545 aaKnown RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 FUKQ8N0W3 1084 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 NSMCE1Q8WV22 266 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 RHOXF2Q9BQY4 288 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 PHACTR1Q9C0D0 580 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 ANO2Q9NQ90 1003 aa10.72□□□□□ -0.69
CLIP1-214ENST00000540539 U3KPZ7 1027 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-214ENST00000540539 AHDC1Q5TGY3 1603 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-214ENST00000540539 ZSCAN12O43309 604 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 CSB-PGBD3P0DP91 1061 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 GJB2P29033 226 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 ACSBG1Q96GR2 724 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 SPAG5Q96R06 1193 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 IFNKQ9P0W0 207 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 HPCAL4Q9UM19 191 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 PPP2R2CQ9Y2T4 447 aa10.71□□□□□ -0.69
CLIP1-214ENST00000540539 BIN1O00499 593 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 OPA1O60313 960 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 KIF4AO95239 1232 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 LINGO3P0C6S8 592 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 GNAT1P11488 350 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 MYBPC2Q14324 1141 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 HSP90AB2PQ58FF8 381 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 ACBD5Q5T8D3 534 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-214ENST00000540539 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.71□□□□□ -0.7
CLIP1-214ENST00000540539 BRAPQ7Z569 592 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 TRIM58Q8NG06 486 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 RASSF8Q8NHQ8 419 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 TRIM4Q9C037 500 aa10.71□□□□□ -0.7
CLIP1-214ENST00000540539 KDRP35968 1356 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 FERP16591 822 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 SF3B2Q13435 895 aaKnown RBP10.7□□□□□ -0.7
CLIP1-214ENST00000540539 ME3Q16798 604 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 LRRC23Q53EV4 343 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-214ENST00000540539 MTHFD1LQ6UB35 978 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 FERMT3Q86UX7 667 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 MAPK8IP1Q9UQF2 711 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 ARHGEF10O15013 1369 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 PHLPP1O60346 1717 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 MYO1EQ12965 1108 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 GNPTABQ3T906 1256 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 RNF187Q5TA31 235 aaPredicted RBP10.7□□□□□ -0.7
CLIP1-214ENST00000540539 RUFY3Q7L099 469 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 FCHSD1Q86WN1 690 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 ARPC5LQ9BPX5 153 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 GORASP1Q9BQQ3 440 aa10.7□□□□□ -0.7
CLIP1-214ENST00000540539 DNAAF2Q9NVR5 837 aaKnown RBP10.7□□□□□ -0.7
CLIP1-214ENST00000540539 LARGE1O95461 756 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 ZNF24P17028 368 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 GGCXP38435 758 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 MTHFSP49914 203 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 SFMBT2Q5VUG0 894 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 CCDC12Q8WUD4 166 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-214ENST00000540539 PGBD1Q96JS3 809 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 SPATA32Q96LK8 384 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 LRRC10BA6NIK2 292 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 AK2P54819 239 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 LEO1Q8WVC0 666 aaPredicted RBP10.69□□□□□ -0.7
CLIP1-214ENST00000540539 CCDC47Q96A33 483 aaKnown RBP10.69□□□□□ -0.7
CLIP1-214ENST00000540539 LRRC59Q96AG4 307 aaKnown RBP10.69□□□□□ -0.7
CLIP1-214ENST00000540539 STAMBPL1Q96FJ0 436 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 TTC14Q96N46 770 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 PAGR1Q9BTK6 254 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 NUP58Q9BVL2 599 aa10.69□□□□□ -0.7
CLIP1-214ENST00000540539 M0R2C6 588 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 ATP5JP18859 108 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 RRS1Q15050 365 aaKnown RBP10.68□□□□□ -0.7
CLIP1-214ENST00000540539 MICALCLQ6ZW33 695 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 CEP57L1Q8IYX8 460 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 PHC3Q8NDX5 983 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 TSC22D3Q99576 134 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 SCAND2PQ9GZW5 306 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-214ENST00000540539 EBF2Q9HAK2 575 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 ANKIB1Q9P2G1 1089 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 TFIP11Q9UBB9 837 aaKnown RBP10.68□□□□□ -0.7
CLIP1-214ENST00000540539 MYO1AQ9UBC5 1043 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 LIMCH1Q9UPQ0 1083 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 COL16A1Q07092 1604 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-214ENST00000540539 B4DLN1 442 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 AGPSO00116 658 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 APBB1O00213 710 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 OPLAHO14841 1288 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 CYP27B1O15528 508 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 SFSWAPQ12872 951 aaKnown RBP10.68□□□□□ -0.7
CLIP1-214ENST00000540539 MPP3Q13368 585 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 ALDH1L2Q3SY69 923 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 CDC37L1Q7L3B6 337 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 CCDC83Q8IWF9 413 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 GALNT15Q8N3T1 639 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 C17orf50Q8WW18 174 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 SH3GL2Q99962 352 aa10.68□□□□□ -0.7
CLIP1-214ENST00000540539 HAUS2Q9NVX0 235 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms