RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 PRDM10Q9NQV6 1147 aa6.71□□□□□ -1.34
VPS13A-213ENST00000539950 PRPF40AO75400 957 aaKnown RBP6.7□□□□□ -1.34
VPS13A-213ENST00000539950 ITGB5P18084 799 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 ITIH2P19823 946 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 EIF4BP23588 611 aaKnown RBP6.7□□□□□ -1.34
VPS13A-213ENST00000539950 PRKCQQ04759 706 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 ZNF792Q3KQV3 632 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-213ENST00000539950 SV2BQ7L1I2 683 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 VAV3Q9UKW4 847 aa6.7□□□□□ -1.34
VPS13A-213ENST00000539950 PRAMEF27A3QJZ7 478 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 ANKRD33BA6NCL7 494 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 FUT4P22083 530 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 CDK8P49336 464 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 AOC3Q16853 763 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 TTBK2Q6IQ55 1244 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 SND1Q7KZF4 910 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS13A-213ENST00000539950 CYFIP1Q7L576 1253 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 PLPPR2Q96GM1 343 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 DUSP9Q99956 384 aaKnown RBP6.69□□□□□ -1.34
VPS13A-213ENST00000539950 AK5Q9Y6K8 562 aa6.69□□□□□ -1.34
VPS13A-213ENST00000539950 TMEM265A0A087WTH1 108 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 CDC37L1Q7L3B6 337 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 ARMCX6Q7L4S7 300 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 AEBP1Q8IUX7 1158 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 HRASLS5Q96KN8 279 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 TNKS2Q9H2K2 1166 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 FBRSQ9HAH7 460 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 ADAMTS6Q9UKP5 1117 aa6.68□□□□□ -1.34
VPS13A-213ENST00000539950 IGF2BP3O00425 579 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 PAPLNO95428 1278 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 EOMESO95936 686 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 RNASE1P07998 156 aaKnown RBP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 JUNBP17275 347 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 CCDC85BQ15834 202 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 EAPPQ56P03 285 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 KCT2Q8NC54 265 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 ZNF507Q8TCN5 953 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 MBNL3Q9NUK0 354 aaKnown RBP6.67□□□□□ -1.34
VPS13A-213ENST00000539950 GTF2IRD1Q9UHL9 959 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 PCDHB5Q9Y5E4 795 aa6.67□□□□□ -1.34
VPS13A-213ENST00000539950 LRIG2O94898 1065 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 SLITRK5O94991 958 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 SEPT6Q14141 434 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 SLBPQ14493 270 aaKnown RBP eCLIP6.66□□□□□ -1.34
VPS13A-213ENST00000539950 NKG7Q16617 165 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 HDXQ7Z353 690 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 SPACA3Q8IXA5 215 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 ASIC4Q96FT7 647 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 WNT10AQ9GZT5 417 aa6.66□□□□□ -1.34
VPS13A-213ENST00000539950 RBAK-RBAKDNI3L0D1 243 aa6.65□□□□□ -1.34
VPS13A-213ENST00000539950 MAP3K11Q16584 847 aa6.65□□□□□ -1.34
VPS13A-213ENST00000539950 NKPD1Q17RQ9 610 aa6.65□□□□□ -1.34
VPS13A-213ENST00000539950 WIPI1Q5MNZ9 446 aaPredicted RBP6.65□□□□□ -1.34
VPS13A-213ENST00000539950 MEI1Q5TIA1 1274 aa6.65□□□□□ -1.34
VPS13A-213ENST00000539950 SNX11Q9Y5W9 270 aa6.65□□□□□ -1.34
VPS13A-213ENST00000539950 CNTNAP4Q9C0A0 1308 aa6.65□□□□□ -1.35
VPS13A-213ENST00000539950 ETF1P62495 437 aaKnown RBP6.64□□□□□ -1.35
VPS13A-213ENST00000539950 RPS26P62854 115 aaKnown RBP6.64□□□□□ -1.35
VPS13A-213ENST00000539950 OGFOD2Q6N063 350 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 PI4K2BQ8TCG2 481 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 FOXQ1Q9C009 403 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 RC3H2Q9HBD1 1191 aaKnown RBP6.64□□□□□ -1.35
VPS13A-213ENST00000539950 PRDM7Q9NQW5 492 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 PRDM5Q9NQX1 630 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-213ENST00000539950 PARP2Q9UGN5 583 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 SNCAIPQ9Y6H5 919 aa6.64□□□□□ -1.35
VPS13A-213ENST00000539950 PRR33A8MZF0 331 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 GFRA2O00451 464 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 LIG3P49916 1009 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 FGD1P98174 961 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 ANGEL2Q5VTE6 544 aaKnown RBP6.63□□□□□ -1.35
VPS13A-213ENST00000539950 DNAJC14Q6Y2X3 702 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-213ENST00000539950 AGMOQ6ZNB7 445 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 NPAS4Q8IUM7 802 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 LRRN4CLQ8ND94 238 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 RIN3Q8TB24 985 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 MIPEPQ99797 713 aa6.63□□□□□ -1.35
VPS13A-213ENST00000539950 CARMIL2Q6F5E8 1435 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 GNAT3A8MTJ3 354 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 PDIA4P13667 645 aaKnown RBP6.62□□□□□ -1.35
VPS13A-213ENST00000539950 GRK4P32298 578 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 CAP2P40123 477 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 IKZF1Q13422 519 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 ATG4DQ86TL0 474 aaPredicted RBP6.62□□□□□ -1.35
VPS13A-213ENST00000539950 FAM161BQ96MY7 647 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 MAPK8IP1Q9UQF2 711 aa6.62□□□□□ -1.35
VPS13A-213ENST00000539950 PITPNM2Q9BZ72 1349 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 BIN1O00499 593 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 CTSHP09668 335 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 YBX3P16989 372 aaKnown RBP eCLIP6.61□□□□□ -1.35
VPS13A-213ENST00000539950 TFE3P19532 575 aaPredicted RBP6.61□□□□□ -1.35
VPS13A-213ENST00000539950 LMNB1P20700 586 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 DAB2P98082 770 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 PRAMEF13Q5VWM6 474 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 SLC23A3Q6PIS1 610 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 HID1Q8IV36 788 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 MFSD2AQ8NA29 543 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 XAGE3Q8WTP9 111 aa6.61□□□□□ -1.35
VPS13A-213ENST00000539950 ASB11Q8WXH4 323 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms