RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 WASF1Q92558 559 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 KIFC2Q96AC6 838 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 TMEM87BQ96K49 555 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 NAPBQ9H115 298 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.83□□□□□ -0.36
SYNE1-237ENST00000539504 PHACTR2O75167 634 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 MCAMP43121 646 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 SRGAP1Q7Z6B7 1085 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 ZNF532Q9HCE3 1301 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 GUCY1A2P33402 732 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 RBL2Q08999 1139 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 NR5A1Q13285 461 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 BRD3Q15059 726 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 HSP90B2PQ58FF3 399 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 CEP112Q8N8E3 955 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.82□□□□□ -0.36
SYNE1-237ENST00000539504 H3BQF6 201 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 EIF3JO75822 258 aaKnown RBP12.82□□□□□ -0.36
SYNE1-237ENST00000539504 ADD2P35612 726 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 PROSER2Q86WR7 435 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-237ENST00000539504 NBPF3Q9H094 633 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 ATG3Q9NT62 314 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 PCDHB6Q9Y5E3 794 aa12.82□□□□□ -0.36
SYNE1-237ENST00000539504 A0A0U1RQJ8 604 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 GPTP24298 496 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 WWC2Q6AWC2 1192 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 USP49Q70CQ1 688 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 ATRIPQ8WXE1 791 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 CABP5Q9NP86 173 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 FEZ2Q9UHY8 353 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-237ENST00000539504 CTAGE9A4FU28 777 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 TULP2O00295 520 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 COBLO75128 1261 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 CASP1P29466 404 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 AKAP17AQ02040 695 aaKnown RBP12.81□□□□□ -0.36
SYNE1-237ENST00000539504 RTN1Q16799 776 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 RAD9BQ6WBX8 426 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 HDXQ7Z353 690 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 RNF216Q9NWF9 866 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-237ENST00000539504 CDC23Q9UJX2 597 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 WDR19Q8NEZ3 1342 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 LAMA4Q16363 1823 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 ERICH2A1L162 156 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 ZNF18P17022 549 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 RILPL1Q5EBL4 403 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 SMYD4Q8IYR2 804 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-237ENST00000539504 LY9Q9HBG7 655 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 ADGRG1Q9Y653 693 aa12.81□□□□□ -0.36
SYNE1-237ENST00000539504 FAM237AA0A1B0GTK4 181 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 PTPREP23469 700 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 CCT6AP40227 531 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 PLCD1P51178 756 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 SART3Q15020 963 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 KANK3Q6NY19 840 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 SUGCTQ9HAC7 445 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 PIH1D3Q9NQM4 214 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 ZSWIM5Q9P217 1185 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 PES1O00541 588 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 TFRCP02786 760 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 MDM2Q00987 491 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 MORC3Q14149 939 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 NTRK3Q16288 839 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 SYNE4Q8N205 404 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 IGDCC4Q8TDY8 1250 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 STAMQ92783 540 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 EXOC4Q96A65 974 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 TEX13AQ9BXU3 409 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 CSRNP2Q9H175 543 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 MEGF6O75095 1541 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 MMP1P03956 469 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 NR1I3Q14994 352 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 TTF1Q15361 905 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 SKIDA1Q1XH10 827 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 SLC35F6Q8N357 371 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 CDC5LQ99459 802 aaKnown RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 RASSF4Q9H2L5 321 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 FBXO2Q9UK22 296 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-237ENST00000539504 WWC3Q9ULE0 1092 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 CEP131Q9UPN4 1083 aa12.8□□□□□ -0.36
SYNE1-237ENST00000539504 CTAGE15A4D2H0 777 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 POTEB2H3BUK9 544 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 CTAGE8P0CG41 777 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 PDE6AP16499 860 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 CASP14P31944 242 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 TDO2P48775 406 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 TOB1P50616 345 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-237ENST00000539504 CTAGE6Q86UF2 777 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 CTAGE4Q8IX94 777 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 ACRBPQ8NEB7 543 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 HELBQ8NG08 1087 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-237ENST00000539504 ABCB6Q9NP58 842 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 SYNRGQ9UMZ2 1314 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 TRIM66O15016 1216 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 MFSD6Q6ZSS7 791 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 GOLGA5Q8TBA6 731 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 PANX2Q96RD6 677 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 UBXN6Q9BZV1 441 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 FAM217BQ9NTX9 383 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-237ENST00000539504 N4BP3O15049 544 aa12.79□□□□□ -0.36
SYNE1-237ENST00000539504 FMNL1O95466 1100 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms