RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 USP40Q9NVE5 1235 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 MSRAQ9UJ68 235 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 SKIV2LQ15477 1246 aaKnown RBP11.6□□□□□ -0.55
USP28-205ENST00000537706 CDC42EP5Q6NZY7 148 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 FBXO33Q7Z6M2 555 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 PLEKHH3Q7Z736 793 aa11.6□□□□□ -0.55
USP28-205ENST00000537706 ENTPD3O75355 529 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 GNAI1P63096 354 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 RAB30Q15771 203 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 CCER1Q8TC90 406 aaPredicted RBP11.59□□□□□ -0.55
USP28-205ENST00000537706 AS3MTQ9HBK9 375 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 TMOD4Q9NZQ9 345 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 UTYO14607 1347 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 LTBP2Q14767 1821 aa11.59□□□□□ -0.55
USP28-205ENST00000537706 TRIM43BA6NCK2 446 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 SMIM22K7EJ46 135 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 CASP7P55210 303 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 ATP2B2Q01814 1243 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 CCL14Q16627 93 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 ZNF280CQ8ND82 737 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 WDR66Q8TBY9 1149 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 TRIM43Q96BQ3 446 aaPredicted RBP11.58□□□□□ -0.55
USP28-205ENST00000537706 EDC3Q96F86 508 aaKnown RBP11.58□□□□□ -0.55
USP28-205ENST00000537706 TRIM35Q9UPQ4 493 aa11.58□□□□□ -0.55
USP28-205ENST00000537706 SPTBN5Q9NRC6 3674 aaKnown RBP11.58□□□□□ -0.56
USP28-205ENST00000537706 MROH5Q6ZUA9 1318 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 CLTBP09497 229 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 HMGCS2P54868 508 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 NFIAQ12857 509 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 SPP2Q13103 211 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 MAP2K5Q13163 448 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 SNX17Q15036 470 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 GJC2Q5T442 439 aaPredicted RBP11.58□□□□□ -0.56
USP28-205ENST00000537706 C1orf53Q5VUE5 145 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 GPR142Q7Z601 462 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 LINS1Q8NG48 757 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 USP6NLQ92738 828 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 ZNF594Q96JF6 807 aaPredicted RBP11.58□□□□□ -0.56
USP28-205ENST00000537706 KCNH6Q9H252 994 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP28-205ENST00000537706 FAM198AQ9UFP1 575 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 DAGLAQ9Y4D2 1042 aa11.58□□□□□ -0.56
USP28-205ENST00000537706 MYCNP04198 464 aaPredicted RBP11.57□□□□□ -0.56
USP28-205ENST00000537706 FOXK2Q01167 660 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 MORN1Q5T089 497 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 LMBR1LQ6UX01 489 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 MICALL1Q8N3F8 863 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 RUNDC1Q96C34 613 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 OSBPL5Q9H0X9 879 aaPredicted RBP11.57□□□□□ -0.56
USP28-205ENST00000537706 IFT57Q9NWB7 429 aa11.57□□□□□ -0.56
USP28-205ENST00000537706 CCNA1P78396 465 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 SH3RF1Q7Z6J0 888 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 HERVK_113Q902F9 699 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 FAM86C2PA6NEL3 165 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 PRR33A8MZF0 331 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 FOXO4P98177 505 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 CCDC146Q8IYE0 955 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 MTIF3Q9H2K0 278 aaKnown RBP11.56□□□□□ -0.56
USP28-205ENST00000537706 COG5Q9UP83 839 aa11.56□□□□□ -0.56
USP28-205ENST00000537706 KIAA0355O15063 1070 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 ERC2O15083 957 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 RGS3P49796 1198 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 ERVK-9P63128 1117 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 ERVK-24P63145 666 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 MAP3K10Q02779 954 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 TLE2Q04725 743 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 CSPP1Q1MSJ5 1256 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 SH3D19Q5HYK7 790 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 DNAAF4Q8WXU2 420 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 PBX4Q9BYU1 374 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 TMEM39AQ9NV64 488 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 IVNS1ABPQ9Y6Y0 642 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 ATRNL1Q5VV63 1379 aa11.55□□□□□ -0.56
USP28-205ENST00000537706 USP17L5A8MUK1 530 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 IFIT1P09914 478 aaKnown RBP11.54□□□□□ -0.56
USP28-205ENST00000537706 ADCYAP1R1P41586 468 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 HERVK_113P62684 666 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 PPIGQ13427 754 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP28-205ENST00000537706 ADGRE1Q14246 886 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 WDR78Q5VTH9 848 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 CCDC84Q86UT8 332 aaPredicted RBP11.54□□□□□ -0.56
USP28-205ENST00000537706 UIMC1Q96RL1 719 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 PAGR1Q9BTK6 254 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 IDI2Q9BXS1 227 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 SLC28A3Q9HAS3 691 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 AK9Q5TCS8 1911 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 DOCK3Q8IZD9 2030 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 SLC15A5A6NIM6 579 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 GTPBP6O43824 516 aaPredicted RBP11.54□□□□□ -0.56
USP28-205ENST00000537706 LDHBP07195 334 aaKnown RBP11.54□□□□□ -0.56
USP28-205ENST00000537706 ZNF853P0CG23 659 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 HOXA7P31268 230 aaPredicted RBP11.54□□□□□ -0.56
USP28-205ENST00000537706 KCNQ1P51787 676 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 EPHB4P54760 987 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 METTL24Q5JXM2 366 aa11.54□□□□□ -0.56
USP28-205ENST00000537706 PI4K2BG5E9Z4 385 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 TBC1D12O60347 775 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 NHLH1Q02575 133 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 TFF2Q03403 129 aa11.53□□□□□ -0.56
USP28-205ENST00000537706 ZFPM1Q8IX07 1006 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms