RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PTPRFP10586 1907 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 MOGSQ13724 837 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 RRP1BQ14684 758 aaKnown RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 TAF1CQ15572 869 aaPredicted RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 SLC9C2Q5TAH2 1124 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 CERS3Q8IU89 383 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 RIOK1Q9BRS2 568 aaKnown RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 ZCCHC17Q9NP64 241 aaKnown RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 SAP30BPQ9UHR5 308 aaKnown RBP17.96■□□□□ 0.47
USP28-204ENST00000537642 PALD1Q9ULE6 856 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 ZHX2Q9Y6X8 837 aa17.96■□□□□ 0.47
USP28-204ENST00000537642 TCRBV5S4A2TA0A5A2 114 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 CXCL11O14625 94 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 METTL16Q86W50 562 aaKnown RBP17.95■□□□□ 0.46
USP28-204ENST00000537642 ZFYVE28Q9HCC9 887 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 HERC5Q9UII4 1024 aaKnown RBP17.95■□□□□ 0.46
USP28-204ENST00000537642 AFG3L2Q9Y4W6 797 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 MYH7P12883 1935 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 ZNF532Q9HCE3 1301 aa17.95■□□□□ 0.46
USP28-204ENST00000537642 USP5P45974 858 aa17.94■□□□□ 0.46
USP28-204ENST00000537642 CCDC84Q86UT8 332 aaPredicted RBP17.94■□□□□ 0.46
USP28-204ENST00000537642 DNAJC18Q9H819 358 aa17.94■□□□□ 0.46
USP28-204ENST00000537642 MAGEB6P1A0A0J9YX57 407 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 CCDC85CA6NKD9 419 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 CAP2P40123 477 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 SLFNL1Q499Z3 407 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 ANKRD23Q86SG2 305 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 FOXP4Q8IVH2 680 aaPredicted RBP17.93■□□□□ 0.46
USP28-204ENST00000537642 ECHDC1Q9NTX5 307 aa17.93■□□□□ 0.46
USP28-204ENST00000537642 A0A0G2JLL6 359 aaPredicted RBP17.92■□□□□ 0.46
USP28-204ENST00000537642 ADD2P35612 726 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 CAP1Q01518 475 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 SP3Q02447 781 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 PKN2Q16513 984 aaKnown RBP17.92■□□□□ 0.46
USP28-204ENST00000537642 SLC4A8Q2Y0W8 1093 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 GPAT2Q6NUI2 795 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 PRRT2Q7Z6L0 340 aaPredicted RBP17.92■□□□□ 0.46
USP28-204ENST00000537642 CD99L2Q8TCZ2 262 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 NAV1Q8NEY1 1877 aa17.92■□□□□ 0.46
USP28-204ENST00000537642 DDX60LQ5H9U9 1706 aaKnown RBP17.92■□□□□ 0.46
USP28-204ENST00000537642 PDHXO00330 501 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 TLR2O60603 784 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 CHGBP05060 677 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 HLA-DOAP06340 250 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 TSHZ3Q63HK5 1081 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 CRACR2BQ8N4Y2 399 aaPredicted RBP17.91■□□□□ 0.46
USP28-204ENST00000537642 ERO1AQ96HE7 468 aa17.91■□□□□ 0.46
USP28-204ENST00000537642 TRIM75PA6NK02 468 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 JAG1P78504 1218 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 OTOP1Q7RTM1 612 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 LCORLQ8N3X6 602 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 GPATCH3Q96I76 525 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 CRNKL1Q9BZJ0 848 aaKnown RBP17.9■□□□□ 0.46
USP28-204ENST00000537642 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.9■□□□□ 0.46
USP28-204ENST00000537642 TRIM17Q9Y577 477 aa17.9■□□□□ 0.46
USP28-204ENST00000537642 SHROOM1Q2M3G4 852 aaPredicted RBP17.89■□□□□ 0.45
USP28-204ENST00000537642 FBXO46Q6PJ61 603 aaPredicted RBP17.89■□□□□ 0.45
USP28-204ENST00000537642 GADL1Q6ZQY3 521 aa17.89■□□□□ 0.45
USP28-204ENST00000537642 FASTKD5Q7L8L6 764 aaKnown RBP17.89■□□□□ 0.45
USP28-204ENST00000537642 OTUD7AQ8TE49 926 aaPredicted RBP17.89■□□□□ 0.45
USP28-204ENST00000537642 TRIM34Q9BYJ4 488 aa17.89■□□□□ 0.45
USP28-204ENST00000537642 ARMT1Q9H993 441 aa17.89■□□□□ 0.45
USP28-204ENST00000537642 HPS5Q9UPZ3 1129 aa17.89■□□□□ 0.45
USP28-204ENST00000537642 ADGRA2Q96PE1 1338 aa17.89■□□□□ 0.45
USP28-204ENST00000537642 ZSWIM8A7E2V4 1837 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 USP17L5A8MUK1 530 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 SPP2Q13103 211 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 HDAC1Q13547 482 aaPredicted RBP17.88■□□□□ 0.45
USP28-204ENST00000537642 UBE3CQ15386 1083 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 C17orf99Q6UX52 265 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 ZNF280CQ8ND82 737 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 SDR42E1Q8WUS8 393 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 TBC1D2Q9BYX2 928 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 EHD4Q9H223 541 aa17.88■□□□□ 0.45
USP28-204ENST00000537642 LOC285556D6RIA3 1793 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 MBD4O95243 580 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 GDF11O95390 407 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 ASNSP08243 561 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 PLCD1P51178 756 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 AAMPQ13685 434 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 TTC6Q86TZ1 520 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 EFCC1Q9HA90 598 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 CPA4Q9UI42 421 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 SERPINB13Q9UIV8 391 aa17.87■□□□□ 0.45
USP28-204ENST00000537642 BAZ2AQ9UIF9 1905 aaKnown RBP17.86■□□□□ 0.45
USP28-204ENST00000537642 PRKAB2O43741 272 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 POLR3DP05423 398 aaPredicted RBP17.86■□□□□ 0.45
USP28-204ENST00000537642 CYP2C8P10632 490 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 EVX2Q03828 476 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 ZSCAN25Q6NSZ9 544 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 TATDN1Q6P1N9 297 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 KBTBD3Q8NAB2 608 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 PI4K2BQ8TCG2 481 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 PARK7Q99497 189 aaKnown RBP17.86■□□□□ 0.45
USP28-204ENST00000537642 DCP1AQ9NPI6 582 aaPredicted RBP17.86■□□□□ 0.45
USP28-204ENST00000537642 GINM1Q9NU53 330 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 MCM9Q9NXL9 1143 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 ZBTB21Q9ULJ3 1066 aa17.86■□□□□ 0.45
USP28-204ENST00000537642 SLC45A1Q9Y2W3 748 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms