RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 OS9Q13438 667 aaPredicted RBP10.39□□□□□ -0.75
USP28-203ENST00000537490 CCDC158Q5M9N0 1113 aa10.39□□□□□ -0.75
USP28-203ENST00000537490 TREML2Q5T2D2 321 aa10.39□□□□□ -0.75
USP28-203ENST00000537490 NAA16Q6N069 864 aaPredicted RBP10.39□□□□□ -0.75
USP28-203ENST00000537490 AATFQ9NY61 560 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP28-203ENST00000537490 SLC45A1Q9Y2W3 748 aa10.39□□□□□ -0.75
USP28-203ENST00000537490 NOP58Q9Y2X3 529 aaKnown RBP10.39□□□□□ -0.75
USP28-203ENST00000537490 CAP2P40123 477 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 ZAP70P43403 619 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 PPP4CP60510 307 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 HABP4Q5JVS0 413 aaKnown RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 ADGRA1Q86SQ6 560 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 ITPRIPQ8IWB1 547 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 FTSJ3Q8IY81 847 aaKnown RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 TGFBRAP1Q8WUH2 860 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 EAF2Q96CJ1 260 aaPredicted RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 GCC1Q96CN9 775 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 SHISA4Q96DD7 197 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 ZNF512BQ96KM6 892 aaPredicted RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 CCDC8Q9H0W5 538 aaPredicted RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 PIH1D3Q9NQM4 214 aaKnown RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 TLR7Q9NYK1 1049 aaKnown RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 DBNLQ9UJU6 430 aaKnown RBP10.38□□□□□ -0.75
USP28-203ENST00000537490 AGTPBP1Q9UPW5 1226 aa10.38□□□□□ -0.75
USP28-203ENST00000537490 RBBP6Q7Z6E9 1792 aaKnown RBP10.37□□□□□ -0.75
USP28-203ENST00000537490 BAG3O95817 575 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 CCL5P13501 91 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 FLT3LGP49771 235 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 JAG1P78504 1218 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 MAPKAPK5Q8IW41 473 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 ANKRD13CQ8N6S4 541 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 ZNF280CQ8ND82 737 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 SMCR8Q8TEV9 937 aaPredicted RBP10.37□□□□□ -0.75
USP28-203ENST00000537490 NOL10Q9BSC4 688 aaKnown RBP10.37□□□□□ -0.75
USP28-203ENST00000537490 PI4KBQ9UBF8 816 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 BIN2Q9UBW5 565 aaPredicted RBP10.37□□□□□ -0.75
USP28-203ENST00000537490 HERC5Q9UII4 1024 aaKnown RBP10.37□□□□□ -0.75
USP28-203ENST00000537490 DOCK2Q92608 1830 aa10.37□□□□□ -0.75
USP28-203ENST00000537490 COL2A1P02458 1487 aaPredicted RBP10.36□□□□□ -0.75
USP28-203ENST00000537490 USP17L5A8MUK1 530 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 TNPO2O14787 897 aaKnown RBP10.36□□□□□ -0.75
USP28-203ENST00000537490 ADCY3O60266 1144 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 GJB1P08034 283 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 ELNP15502 786 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 PLCG2P16885 1265 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 GJA8P48165 433 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 HMGCS2P54868 508 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 DYNLL1P63167 89 aaKnown RBP10.36□□□□□ -0.75
USP28-203ENST00000537490 UBXN2AP68543 259 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 SH3D19Q5HYK7 790 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 CEP85Q6P2H3 762 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 PROCA1Q8NCQ7 364 aaPredicted RBP10.36□□□□□ -0.75
USP28-203ENST00000537490 SLAIN1Q8ND83 568 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 RNF208Q9H0X6 261 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 UNC93B1Q9H1C4 597 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 DHX36Q9H2U1 1008 aaKnown RBP10.36□□□□□ -0.75
USP28-203ENST00000537490 DNAJC18Q9H819 358 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 PCDH10Q9P2E7 1040 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 PALD1Q9ULE6 856 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 HTTP42858 3142 aa10.36□□□□□ -0.75
USP28-203ENST00000537490 FLT1P17948 1338 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 CYP7A1P22680 504 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 SHROOM1Q2M3G4 852 aaPredicted RBP10.35□□□□□ -0.75
USP28-203ENST00000537490 UBE2Q1Q7Z7E8 422 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 METTL16Q86W50 562 aaKnown RBP10.35□□□□□ -0.75
USP28-203ENST00000537490 FOXP4Q8IVH2 680 aaPredicted RBP10.35□□□□□ -0.75
USP28-203ENST00000537490 NKX2-3Q8TAU0 364 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 PANK1Q8TE04 598 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 WDR18Q9BV38 432 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 TBC1D2Q9BYX2 928 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 ASCC2Q9H1I8 757 aaPredicted RBP10.35□□□□□ -0.75
USP28-203ENST00000537490 SAP30BPQ9UHR5 308 aaKnown RBP10.35□□□□□ -0.75
USP28-203ENST00000537490 PNMA3Q9UL41 463 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 NDUFB9Q9Y6M9 179 aa10.35□□□□□ -0.75
USP28-203ENST00000537490 H0YGN5 161 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 IDH1O75874 414 aaKnown RBP10.34□□□□□ -0.75
USP28-203ENST00000537490 GDF11O95390 407 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 INHAP05111 366 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 GCLCP48506 637 aaPredicted RBP10.34□□□□□ -0.75
USP28-203ENST00000537490 IRF5Q13568 498 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 FAM110CQ1W6H9 321 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
USP28-203ENST00000537490 PXYLP1Q8TE99 480 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 U2AF1L4Q8WU68 220 aaKnown RBP10.34□□□□□ -0.75
USP28-203ENST00000537490 COA7Q96BR5 231 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 ANTXR1Q9H6X2 564 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 AS3MTQ9HBK9 375 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 COLQQ9Y215 455 aaPredicted RBP10.34□□□□□ -0.75
USP28-203ENST00000537490 EXOC6BQ9Y2D4 811 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 PHIPQ8WWQ0 1821 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 DOCK1Q14185 1865 aa10.34□□□□□ -0.75
USP28-203ENST00000537490 PEX10O60683 326 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 IGSF3O75054 1194 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 SGPL1O95470 568 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 ASNSP08243 561 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 BACE1P56817 501 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 PABPC4Q13310 644 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP28-203ENST00000537490 MTMR2Q13614 643 aa10.33□□□□□ -0.76
USP28-203ENST00000537490 CRACR2BQ8N4Y2 399 aaPredicted RBP10.33□□□□□ -0.76
USP28-203ENST00000537490 MAGEB6Q8N7X4 407 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms