RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 BECN2A8MW95 431 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 MAP2K7O14733 419 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 TPD52L2O43399 206 aaKnown RBP4.27□□□□□ -1.73
MCF2-210ENST00000536274 C21orf2O43822 256 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 MTHFSP49914 203 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 RPS6KA3P51812 740 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 VSNL1P62760 191 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 MRPS25P82663 173 aaKnown RBP4.27□□□□□ -1.73
MCF2-210ENST00000536274 TRDNQ13061 729 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 KCTD19Q17RG1 926 aaPredicted RBP4.27□□□□□ -1.73
MCF2-210ENST00000536274 BEND6Q5SZJ8 279 aaPredicted RBP4.27□□□□□ -1.73
MCF2-210ENST00000536274 RUFY3Q7L099 469 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 MAEAQ7L5Y9 396 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 TMEM87AQ8NBN3 555 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 YIPF2Q9BWQ6 316 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 XPO4Q9C0E2 1151 aaKnown RBP4.27□□□□□ -1.73
MCF2-210ENST00000536274 ANKZF1Q9H8Y5 726 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 SMC3Q9UQE7 1217 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 MTMR6Q9Y217 621 aa4.27□□□□□ -1.73
MCF2-210ENST00000536274 RGPD5Q99666 1765 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 GOLGA6L4A6NEF3 574 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 A6NJR5 290 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 EFCAB8A8MWE9 144 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 PPP1R37O75864 691 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 POLD1P28340 1107 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 IRX1P78414 480 aaPredicted RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 ANKRD13DQ6ZTN6 518 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 FAM228AQ86W67 206 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 DHX40Q8IX18 779 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 IGSF22Q8N9C0 903 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 ARMC2Q8NEN0 867 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 GCC1Q96CN9 775 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 PGBD1Q96JS3 809 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 CABS1Q96KC9 395 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 FAM107BQ9H098 131 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 GOPCQ9HD26 462 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 DOT1LQ8TEK3 1739 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 WDR17Q8IZU2 1322 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 GOLGA8CPA6NN73 597 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 FCHSD2O94868 740 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 PTPREP23469 700 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 EIF5P55010 431 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 SETQ01105 290 aaPredicted RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 STK3Q13188 491 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 CASP8Q14790 479 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 SPRED3Q2MJR0 410 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 AKNAD1Q5T1N1 836 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 RNF187Q5TA31 235 aaPredicted RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 ERC1Q8IUD2 1116 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 ANKRD18AQ8IVF6 992 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 KCNH5Q8NCM2 988 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 BCAS4Q8TDM0 211 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 SPATS2LQ9NUQ6 558 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 MKRN1Q9UHC7 482 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 TRAK1Q9UPV9 953 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 VWA3AA6NCI4 1184 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 WDHD1O75717 1129 aaPredicted RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 CAVIN2O95810 425 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 SYF2O95926 243 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 ABL1P00519 1130 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 OATP04181 439 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 ATP1A3P13637 1013 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 FNTAP49354 379 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 FLIIQ13045 1269 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 ME3Q16798 604 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 MYLK4Q86YV6 388 aaPredicted RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 GPR161Q8N6U8 529 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 DPF2Q92785 391 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 DDX17Q92841 729 aaKnown RBP4.26□□□□□ -1.73
MCF2-210ENST00000536274 PSMD1Q99460 953 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 BTG4Q9NY30 223 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 KIF20BQ96Q89 1820 aa4.26□□□□□ -1.73
MCF2-210ENST00000536274 ELP1O95163 1332 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 TMEM232C9JQI7 657 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 BACH1O14867 736 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 ZEB2O60315 1214 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 RPS6KA5O75582 802 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 RGS20O76081 388 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 SNUPNO95149 360 aaKnown RBP4.25□□□□□ -1.73
MCF2-210ENST00000536274 RAB27AP51159 221 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 ST3GAL1Q11201 340 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 DSG2Q14126 1118 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 MTF1Q14872 753 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 PREPLQ4J6C6 727 aaPredicted RBP4.25□□□□□ -1.73
MCF2-210ENST00000536274 SLC27A3Q5K4L6 730 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 CASC1Q6TDU7 716 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 TOGARAM2Q6ZUX3 1019 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 RSRC2Q7L4I2 434 aaKnown RBP4.25□□□□□ -1.73
MCF2-210ENST00000536274 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.25□□□□□ -1.73
MCF2-210ENST00000536274 FMNL3Q8IVF7 1028 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 USHBP1Q8N6Y0 703 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 KLHL23Q8NBE8 558 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 AFAP1L1Q8TED9 768 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 LMBR1Q8WVP7 490 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 SH3GL3Q99963 347 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 MTFR1LQ9H019 292 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 NBPF3Q9H094 633 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 BRCA1P38398 1863 aaKnown RBP4.25□□□□□ -1.73
MCF2-210ENST00000536274 EBAG9O00559 213 aa4.25□□□□□ -1.73
MCF2-210ENST00000536274 CTAGE5O15320 804 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms