RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 EGFRP00533 1210 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 ANKRD1Q15327 319 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 GPR162Q16538 588 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 ZFPM1Q8IX07 1006 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 MICALL2Q8IY33 904 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 AMOTL1Q8IY63 956 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 GPC2Q8N158 579 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 GPHNQ9NQX3 736 aaPredicted RBP18.85■□□□□ 0.61
TRIM3-213ENST00000533309 SPDYE2Q495Y8 402 aa18.84■□□□□ 0.61
TRIM3-213ENST00000533309 RRP12Q5JTH9 1297 aaKnown RBP18.84■□□□□ 0.61
TRIM3-213ENST00000533309 C9orf131Q5VYM1 1079 aa18.84■□□□□ 0.61
TRIM3-213ENST00000533309 BRF1Q92994 677 aa18.84■□□□□ 0.61
TRIM3-213ENST00000533309 TOMM22Q9NS69 142 aa18.84■□□□□ 0.61
TRIM3-213ENST00000533309 COL2A1P02458 1487 aaPredicted RBP18.83■□□□□ 0.61
TRIM3-213ENST00000533309 WNT10BO00744 389 aa18.83■□□□□ 0.61
TRIM3-213ENST00000533309 SLC3A2P08195 630 aaKnown RBP18.83■□□□□ 0.61
TRIM3-213ENST00000533309 CUL4AQ13619 759 aa18.83■□□□□ 0.61
TRIM3-213ENST00000533309 SPRYD3Q8NCJ5 442 aa18.83■□□□□ 0.61
TRIM3-213ENST00000533309 SLC44A5Q8NCS7 719 aa18.83■□□□□ 0.61
TRIM3-213ENST00000533309 ZNF70Q9UC06 446 aaPredicted RBP18.83■□□□□ 0.61
TRIM3-213ENST00000533309 CNOT7Q9UIV1 285 aaKnown RBP18.83■□□□□ 0.61
TRIM3-213ENST00000533309 CLRN2A0PK11 232 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 PDE4BQ07343 736 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 TCP10Q12799 353 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 ME3Q16798 604 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 NBPF9Q3BBW0 867 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 C16orf86Q6ZW13 317 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 SH3BP5LQ7L8J4 393 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 ESR2Q92731 530 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 ATRNL1Q5VV63 1379 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 SH2B2O14492 632 aaPredicted RBP18.82■□□□□ 0.6
TRIM3-213ENST00000533309 ENTPD3O75355 529 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 GABPAQ06546 454 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 ST3GAL1Q11201 340 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 IGDCC4Q8TDY8 1250 aa18.82■□□□□ 0.6
TRIM3-213ENST00000533309 CNTNAP1P78357 1384 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 DDTLA6NHG4 134 aaPredicted RBP18.81■□□□□ 0.6
TRIM3-213ENST00000533309 EVCP57679 992 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 FGD1P98174 961 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 APOBRQ0VD83 1088 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 SAMD7Q7Z3H4 446 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 TTC6Q86TZ1 520 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 TMEM87BQ96K49 555 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 ZSCAN31Q96LW9 406 aaPredicted RBP18.81■□□□□ 0.6
TRIM3-213ENST00000533309 GPRC5DQ9NZD1 345 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 TMOD2Q9NZR1 351 aa18.81■□□□□ 0.6
TRIM3-213ENST00000533309 GRIN3BO60391 1043 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 RANBP6O60518 1105 aaKnown RBP18.8■□□□□ 0.6
TRIM3-213ENST00000533309 CDK8P49336 464 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 FKBP1CQ5VVH2 108 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 MTA3Q9BTC8 594 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 LY9Q9HBG7 655 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 SENP2Q9HC62 589 aa18.8■□□□□ 0.6
TRIM3-213ENST00000533309 SH2B1Q9NRF2 756 aaPredicted RBP18.8■□□□□ 0.6
TRIM3-213ENST00000533309 ANGEL1Q9UNK9 670 aaKnown RBP18.8■□□□□ 0.6
TRIM3-213ENST00000533309 GREB1LQ9C091 1923 aaPredicted RBP18.8■□□□□ 0.6
TRIM3-213ENST00000533309 DDNO94850 711 aaPredicted RBP18.79■□□□□ 0.6
TRIM3-213ENST00000533309 RASA1P20936 1047 aa18.79■□□□□ 0.6
TRIM3-213ENST00000533309 TBC1D10BQ4KMP7 808 aaPredicted RBP18.79■□□□□ 0.6
TRIM3-213ENST00000533309 ZKSCAN3Q9BRR0 538 aa18.79■□□□□ 0.6
TRIM3-213ENST00000533309 EHD4Q9H223 541 aa18.79■□□□□ 0.6
TRIM3-213ENST00000533309 DHX36Q9H2U1 1008 aaKnown RBP18.79■□□□□ 0.6
TRIM3-213ENST00000533309 FOXD4L1Q9NU39 408 aa18.79■□□□□ 0.6
TRIM3-213ENST00000533309 SERPINB13Q9UIV8 391 aa18.79■□□□□ 0.6
TRIM3-213ENST00000533309 TCP10L2B9ZVM9 353 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 NT5C2P49902 561 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 SEC23AQ15436 765 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 TMEM67Q5HYA8 995 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 FAM47AQ5JRC9 791 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 RBM26Q5T8P6 1007 aaKnown RBP18.78■□□□□ 0.6
TRIM3-213ENST00000533309 BRPF3Q9ULD4 1205 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 ASTN2O75129 1339 aaPredicted RBP18.78■□□□□ 0.6
TRIM3-213ENST00000533309 IFIT3O14879 490 aaKnown RBP18.78■□□□□ 0.6
TRIM3-213ENST00000533309 MYO1BO43795 1136 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 HLA-DOAP06340 250 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 HSP90AA1P07900 732 aaKnown RBP18.78■□□□□ 0.6
TRIM3-213ENST00000533309 DDIT3P35638 169 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 LIFRP42702 1097 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 KIF4BQ2VIQ3 1234 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 NECAB1Q8N987 351 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 SLKQ9H2G2 1235 aaPredicted RBP18.78■□□□□ 0.6
TRIM3-213ENST00000533309 DNAJC18Q9H819 358 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 MKNK2Q9HBH9 465 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 VEZTQ9HBM0 779 aa18.78■□□□□ 0.6
TRIM3-213ENST00000533309 TNKSO95271 1327 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 H7C1D1 291 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 SLURP2P0DP57 97 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 SGMS1Q86VZ5 419 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 CCDC83Q8IWF9 413 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 TRPM4Q8TD43 1214 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 FAM151AQ8WW52 585 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 ZNF274Q96GC6 653 aaPredicted RBP18.77■□□□□ 0.6
TRIM3-213ENST00000533309 INTS4Q96HW7 963 aaKnown RBP18.77■□□□□ 0.6
TRIM3-213ENST00000533309 ZSCAN10Q96SZ4 725 aaPredicted RBP18.77■□□□□ 0.6
TRIM3-213ENST00000533309 ZNF287Q9HBT7 754 aa18.77■□□□□ 0.6
TRIM3-213ENST00000533309 POLR2AP24928 1970 aaKnown RBP18.77■□□□□ 0.59
TRIM3-213ENST00000533309 ZC3H4Q9UPT8 1303 aaKnown RBP18.76■□□□□ 0.59
TRIM3-213ENST00000533309 KLF18A0A0U1RQI7 1052 aa18.76■□□□□ 0.59
TRIM3-213ENST00000533309 NMT2O60551 498 aa18.76■□□□□ 0.59
TRIM3-213ENST00000533309 PDIA3P30101 505 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms