RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 NKX2-3Q8TAU0 364 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 SMCR8Q8TEV9 937 aaPredicted RBP13.95□□□□□ -0.18
VPS28-214ENST00000531032 DBNDD2Q9BQY9 259 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 TBC1D2Q9BYX2 928 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 GABRQQ9UN88 632 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 CDK5RAP2Q96SN8 1893 aa13.95□□□□□ -0.18
VPS28-214ENST00000531032 GJB1P08034 283 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 CCL5P13501 91 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 CAP2P40123 477 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 GJA8P48165 433 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 RRP1BQ14684 758 aaKnown RBP13.94□□□□□ -0.18
VPS28-214ENST00000531032 CCDC158Q5M9N0 1113 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 TTC39AQ5SRH9 613 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 TREML2Q5T2D2 321 aa13.94□□□□□ -0.18
VPS28-214ENST00000531032 NAA16Q6N069 864 aaPredicted RBP13.94□□□□□ -0.18
VPS28-214ENST00000531032 SH3RF3Q8TEJ3 882 aaPredicted RBP13.94□□□□□ -0.18
VPS28-214ENST00000531032 ZNF512BQ96KM6 892 aaPredicted RBP13.94□□□□□ -0.18
VPS28-214ENST00000531032 HERC5Q9UII4 1024 aaKnown RBP13.94□□□□□ -0.18
VPS28-214ENST00000531032 IGSF3O75054 1194 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 SURF6O75683 361 aaKnown RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 BAG3O95817 575 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 CYP2E1P05181 493 aaPredicted RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 PLCG2P16885 1265 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 PPP4CP60510 307 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 UBXN2AP68543 259 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 SPP2Q13103 211 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 OS9Q13438 667 aaPredicted RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 FAM110CQ1W6H9 321 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 UBE2Q1Q7Z7E8 422 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 ADGRA1Q86SQ6 560 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 ZNF280CQ8ND82 737 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 PXYLP1Q8TE99 480 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 NOL10Q9BSC4 688 aaKnown RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 DHX36Q9H2U1 1008 aaKnown RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 C1orf115Q9H7X2 142 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 SNRKQ9NRH2 765 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 AATFQ9NY61 560 aaKnown RBP eCLIP13.93□□□□□ -0.186e-6■■■■□ 25.6
VPS28-214ENST00000531032 PI4KBQ9UBF8 816 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 PNMA3Q9UL41 463 aa13.93□□□□□ -0.18
VPS28-214ENST00000531032 NOP58Q9Y2X3 529 aaKnown RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 MYO5AQ9Y4I1 1855 aaKnown RBP13.93□□□□□ -0.18
VPS28-214ENST00000531032 USP17L5A8MUK1 530 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 TNPO2O14787 897 aaKnown RBP13.92□□□□□ -0.18
VPS28-214ENST00000531032 ADCY3O60266 1144 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 RLBP1P12271 317 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 FLT3LGP49771 235 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 IRF5Q13568 498 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 DIEXFQ68CQ4 756 aaKnown RBP13.92□□□□□ -0.18
VPS28-214ENST00000531032 FTSJ3Q8IY81 847 aaKnown RBP13.92□□□□□ -0.18
VPS28-214ENST00000531032 ANKRD13CQ8N6S4 541 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 RNF208Q9H0X6 261 aa13.92□□□□□ -0.18
VPS28-214ENST00000531032 BIN2Q9UBW5 565 aaPredicted RBP13.92□□□□□ -0.18
VPS28-214ENST00000531032 FLT1P17948 1338 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 CEP290O15078 2479 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 ZBTB7BO15156 539 aaPredicted RBP13.91□□□□□ -0.18
VPS28-214ENST00000531032 HMGCS2P54868 508 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 HNRNPUQ00839 825 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS28-214ENST00000531032 SH3D19Q5HYK7 790 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 METTL16Q86W50 562 aaKnown RBP13.91□□□□□ -0.18
VPS28-214ENST00000531032 ITPRIPQ8IWB1 547 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 DNAJC18Q9H819 358 aa13.91□□□□□ -0.18
VPS28-214ENST00000531032 DBNLQ9UJU6 430 aaKnown RBP13.91□□□□□ -0.18
VPS28-214ENST00000531032 DOCK3Q8IZD9 2030 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 H0YGN5 161 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 INHAP05111 366 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 ELNP15502 786 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 ZAP70P43403 619 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 GCLCP48506 637 aaPredicted RBP13.9□□□□□ -0.18
VPS28-214ENST00000531032 PABPC4Q13310 644 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS28-214ENST00000531032 MAPKAPK5Q8IW41 473 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 U2AF1L4Q8WU68 220 aaKnown RBP13.9□□□□□ -0.18
VPS28-214ENST00000531032 TGFBRAP1Q8WUH2 860 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 WDR18Q9BV38 432 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 UNC93B1Q9H1C4 597 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 AS3MTQ9HBK9 375 aa13.9□□□□□ -0.18
VPS28-214ENST00000531032 PIH1D3Q9NQM4 214 aaKnown RBP13.9□□□□□ -0.18
VPS28-214ENST00000531032 TLR7Q9NYK1 1049 aaKnown RBP13.9□□□□□ -0.18
VPS28-214ENST00000531032 COLQQ9Y215 455 aaPredicted RBP13.9□□□□□ -0.18
VPS28-214ENST00000531032 ASNSP08243 561 aa13.89□□□□□ -0.19
VPS28-214ENST00000531032 FXR1P51114 621 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS28-214ENST00000531032 FOXP4Q8IVH2 680 aaPredicted RBP13.89□□□□□ -0.19
VPS28-214ENST00000531032 COA7Q96BR5 231 aa13.89□□□□□ -0.19
VPS28-214ENST00000531032 EAF2Q96CJ1 260 aaPredicted RBP13.89□□□□□ -0.19
VPS28-214ENST00000531032 ASCC2Q9H1I8 757 aaPredicted RBP13.89□□□□□ -0.19
VPS28-214ENST00000531032 SGPL1O95470 568 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 BACE1P56817 501 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 JAG1P78504 1218 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 MTMR2Q13614 643 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 CEP85Q6P2H3 762 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 CCDC8Q9H0W5 538 aaPredicted RBP13.88□□□□□ -0.19
VPS28-214ENST00000531032 PAK6Q9NQU5 681 aaPredicted RBP13.88□□□□□ -0.19
VPS28-214ENST00000531032 GINM1Q9NU53 330 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 PALD1Q9ULE6 856 aa13.88□□□□□ -0.19
VPS28-214ENST00000531032 FARP2O94887 1054 aaPredicted RBP13.87□□□□□ -0.19
VPS28-214ENST00000531032 CAPN2P17655 700 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 CYP7A1P22680 504 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 HOXA7P31268 230 aaPredicted RBP13.87□□□□□ -0.19
VPS28-214ENST00000531032 CERS3Q8IU89 383 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 MIER1Q8N108 512 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 CRACR2BQ8N4Y2 399 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms