RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 LMNB1P20700 586 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 NTF4P34130 210 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 ITGAEP38570 1179 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 CD97P48960 835 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 CDK8P49336 464 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 CDK5R2Q13319 367 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 PLPPR2Q96GM1 343 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 PICK1Q9NRD5 415 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 PIM2Q9P1W9 311 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 LEMD3Q9Y2U8 911 aa11.76□□□□□ -0.53
CSDE1-213ENST00000530784 F6X3S4 739 aa11.75□□□□□ -0.53
CSDE1-213ENST00000530784 RLBP1P12271 317 aa11.75□□□□□ -0.53
CSDE1-213ENST00000530784 MRPL58Q14197 206 aaKnown RBP11.75□□□□□ -0.53
CSDE1-213ENST00000530784 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.75□□□□□ -0.53
CSDE1-213ENST00000530784 HOXA10P31260 410 aaPredicted RBP11.74□□□□□ -0.53
CSDE1-213ENST00000530784 ZBTB37Q5TC79 503 aa11.74□□□□□ -0.53
CSDE1-213ENST00000530784 ZNF765Q7L2R6 523 aa11.74□□□□□ -0.53
CSDE1-213ENST00000530784 PHC3Q8NDX5 983 aa11.74□□□□□ -0.53
CSDE1-213ENST00000530784 METTL22Q9BUU2 404 aaPredicted RBP11.74□□□□□ -0.53
CSDE1-213ENST00000530784 IFT140Q96RY7 1462 aa11.74□□□□□ -0.53
CSDE1-213ENST00000530784 FANCGO15287 622 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 GRIK1P39086 918 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 OGFOD3Q6PK18 319 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 CYFIP1Q7L576 1253 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 HDXQ7Z353 690 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 UBE3DQ7Z6J8 389 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 MIR1-1HGQ9H1L0 117 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 PCMTD2Q9NV79 361 aa11.73□□□□□ -0.53
CSDE1-213ENST00000530784 CPSF6Q16630 551 aaKnown RBP eCLIP11.72□□□□□ -0.53
CSDE1-213ENST00000530784 WIPI1Q5MNZ9 446 aaPredicted RBP11.72□□□□□ -0.53
CSDE1-213ENST00000530784 DUSP27Q5VZP5 1158 aa11.72□□□□□ -0.53
CSDE1-213ENST00000530784 INTS5Q6P9B9 1019 aaKnown RBP11.72□□□□□ -0.53
CSDE1-213ENST00000530784 TOPBP1Q92547 1522 aa11.71□□□□□ -0.53
CSDE1-213ENST00000530784 PRAMEF27A3QJZ7 478 aa11.71□□□□□ -0.53
CSDE1-213ENST00000530784 CYP27A1Q02318 531 aa11.71□□□□□ -0.53
CSDE1-213ENST00000530784 PSMG3-AS1Q96PY0 264 aa11.71□□□□□ -0.53
CSDE1-213ENST00000530784 SNCAIPQ9Y6H5 919 aa11.71□□□□□ -0.53
CSDE1-213ENST00000530784 ZNF608Q9ULD9 1512 aaPredicted RBP11.7□□□□□ -0.54
CSDE1-213ENST00000530784 FAM87AP0C7U9 286 aa11.7□□□□□ -0.54
CSDE1-213ENST00000530784 FOSL1P15407 271 aa11.7□□□□□ -0.54
CSDE1-213ENST00000530784 JARID2Q92833 1246 aaPredicted RBP11.7□□□□□ -0.54
CSDE1-213ENST00000530784 ABCC8Q09428 1581 aa11.7□□□□□ -0.54
CSDE1-213ENST00000530784 KIAA1324LA8MWY0 1029 aaPredicted RBP11.69□□□□□ -0.54
CSDE1-213ENST00000530784 CYP26A1O43174 497 aa11.69□□□□□ -0.54
CSDE1-213ENST00000530784 XP32Q5T750 250 aa11.69□□□□□ -0.54
CSDE1-213ENST00000530784 CDC37L1Q7L3B6 337 aa11.69□□□□□ -0.54
CSDE1-213ENST00000530784 RSRP1Q9BUV0 290 aa11.69□□□□□ -0.54
CSDE1-213ENST00000530784 DNMBPQ6XZF7 1577 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 GFRA2O00451 464 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 LEFTY1O75610 366 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 GBP2P32456 591 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-213ENST00000530784 RELL1Q8IUW5 271 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 TMEM74Q96NL1 305 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 BCL11AQ9H165 835 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 LRRC4CQ9HCJ2 640 aa11.68□□□□□ -0.54
CSDE1-213ENST00000530784 RBM47A0AV96 593 aaKnown RBP11.67□□□□□ -0.54
CSDE1-213ENST00000530784 PF4P02776 101 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 SPINK2P20155 84 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 CAMK2GQ13555 558 aaPredicted RBP11.67□□□□□ -0.54
CSDE1-213ENST00000530784 TSNAXIP1Q2TAA8 658 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 CYP27C1Q4G0S4 372 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 ZNF507Q8TCN5 953 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 DUSP23Q9BVJ7 150 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 WNT10AQ9GZT5 417 aa11.67□□□□□ -0.54
CSDE1-213ENST00000530784 EIF4G3O43432 1585 aaKnown RBP11.67□□□□□ -0.54
CSDE1-213ENST00000530784 LMNB2Q03252 620 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 LDLRAD1Q5T700 205 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 BNC2Q6ZN30 1099 aaPredicted RBP11.66□□□□□ -0.54
CSDE1-213ENST00000530784 DTX1Q86Y01 620 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 TOP6BLQ8N6T0 577 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 RHOVQ96L33 236 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 FBRSQ9HAH7 460 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 COPRSQ9NQ92 184 aa11.66□□□□□ -0.54
CSDE1-213ENST00000530784 MINDY4BA8MYZ0 360 aa11.65□□□□□ -0.54
CSDE1-213ENST00000530784 ETF1P62495 437 aaKnown RBP11.65□□□□□ -0.54
CSDE1-213ENST00000530784 KCT2Q8NC54 265 aa11.65□□□□□ -0.54
CSDE1-213ENST00000530784 GRK4P32298 578 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 RPL6Q02878 288 aaKnown RBP11.64□□□□□ -0.55
CSDE1-213ENST00000530784 PWP1Q13610 501 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 MSMPQ1L6U9 139 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 ERMP1Q7Z2K6 904 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 NBPF11Q86T75 865 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 CCDC84Q86UT8 332 aaPredicted RBP11.64□□□□□ -0.55
CSDE1-213ENST00000530784 KBTBD4Q9NVX7 518 aa11.64□□□□□ -0.55
CSDE1-213ENST00000530784 ADAMTS4O75173 837 aa11.63□□□□□ -0.55
CSDE1-213ENST00000530784 FAM160A1Q05DH4 1040 aa11.63□□□□□ -0.55
CSDE1-213ENST00000530784 RIMBP3CA6NJZ7 1639 aa11.63□□□□□ -0.55
CSDE1-213ENST00000530784 RIMBP3BA6NNM3 1639 aa11.63□□□□□ -0.55
CSDE1-213ENST00000530784 RIMBP3Q9UFD9 1639 aa11.63□□□□□ -0.55
CSDE1-213ENST00000530784 F13A1P00488 732 aa11.62□□□□□ -0.55
CSDE1-213ENST00000530784 SLBPQ14493 270 aaKnown RBP eCLIP11.62□□□□□ -0.55
CSDE1-213ENST00000530784 NKG7Q16617 165 aa11.62□□□□□ -0.55
CSDE1-213ENST00000530784 ARMCX6Q7L4S7 300 aa11.62□□□□□ -0.55
CSDE1-213ENST00000530784 TMEM87AQ8NBN3 555 aa11.62□□□□□ -0.55
CSDE1-213ENST00000530784 PRDM10Q9NQV6 1147 aa11.62□□□□□ -0.55
CSDE1-213ENST00000530784 ZC3H7BQ9UGR2 993 aaKnown RBP11.62□□□□□ -0.55
CSDE1-213ENST00000530784 TARBP1Q13395 1621 aaKnown RBP11.61□□□□□ -0.55
CSDE1-213ENST00000530784 FAM221AA4D161 298 aa11.61□□□□□ -0.55
CSDE1-213ENST00000530784 CILPO75339 1184 aa11.61□□□□□ -0.55
CSDE1-213ENST00000530784 GATAD2BQ8WXI9 593 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms