RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 RACK1P63244 317 aaKnown RBP9.15□□□□□ -0.94
CPNE3-207ENST00000523588 FAM196AQ6ZSG2 479 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 USP48Q86UV5 1035 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 SLC51AQ86UW1 340 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 SHISA5Q8N114 240 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 ZNF296Q8WUU4 475 aaPredicted RBP9.15□□□□□ -0.94
CPNE3-207ENST00000523588 DBNDD2Q9BQY9 259 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 LGR6Q9HBX8 967 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 DDX41Q9UJV9 622 aaKnown RBP9.15□□□□□ -0.94
CPNE3-207ENST00000523588 PCDHGB7Q9Y5F8 929 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 TACC3Q9Y6A5 838 aa9.15□□□□□ -0.94
CPNE3-207ENST00000523588 PRAMEF27A3QJZ7 478 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 GSC2O15499 205 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 C9orf131Q5VYM1 1079 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 FBXO27Q8NI29 283 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 MFSD14AQ96MC6 490 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 WNT10AQ9GZT5 417 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 PICK1Q9NRD5 415 aa9.14□□□□□ -0.95
CPNE3-207ENST00000523588 SUPT16HQ9Y5B9 1047 aaKnown RBP9.14□□□□□ -0.95
CPNE3-207ENST00000523588 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.13□□□□□ -0.95
CPNE3-207ENST00000523588 GRK4P32298 578 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 MPP2Q14168 576 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 ZAR1Q86SH2 424 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 NT5DC4Q86YG4 428 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 ZNF507Q8TCN5 953 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 PSMG3-AS1Q96PY0 264 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 LRRC3Q9BY71 257 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 FBRSQ9HAH7 460 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 SSU72Q9NP77 194 aaKnown RBP9.12□□□□□ -0.95
CPNE3-207ENST00000523588 ROBO2Q9HCK4 1378 aa9.12□□□□□ -0.95
CPNE3-207ENST00000523588 BPNT1O95861 308 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 F13BP05160 661 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 CRKP46108 304 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 ZDHHC13Q8IUH4 622 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 SHKBP1Q8TBC3 707 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 TBC1D32Q96NH3 1257 aa9.11□□□□□ -0.95
CPNE3-207ENST00000523588 TLR3O15455 904 aaKnown RBP9.1□□□□□ -0.95
CPNE3-207ENST00000523588 ETF1P62495 437 aaKnown RBP9.1□□□□□ -0.95
CPNE3-207ENST00000523588 CDK5R2Q13319 367 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 DIEXFQ68CQ4 756 aaKnown RBP9.1□□□□□ -0.95
CPNE3-207ENST00000523588 REC114Q7Z4M0 266 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 FBXL6Q8N531 539 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 KCT2Q8NC54 265 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 EAF1Q96JC9 268 aaPredicted RBP9.1□□□□□ -0.95
CPNE3-207ENST00000523588 SPON2Q9BUD6 331 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 NT5C1AQ9BXI3 368 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 UBP1Q9NZI7 540 aa9.1□□□□□ -0.95
CPNE3-207ENST00000523588 POLR3KQ9Y2Y1 108 aaPredicted RBP9.1□□□□□ -0.95
CPNE3-207ENST00000523588 WDR64B1ANS9 1081 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 RAD51AP2Q09MP3 1159 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 SLBPQ14493 270 aaKnown RBP eCLIP9.09□□□□□ -0.95
CPNE3-207ENST00000523588 NKG7Q16617 165 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 CDC37L1Q7L3B6 337 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 KIAA0825Q8IV33 1275 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 IGSF5Q9NSI5 407 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 CORINQ9Y5Q5 1042 aa9.09□□□□□ -0.95
CPNE3-207ENST00000523588 PRR36Q9H6K5 1346 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 PRR19A6NJB7 356 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 FAM170BA6NMN3 283 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 E9PSI1 815 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 TCF3P15923 654 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 CAP2P40123 477 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 HID1Q8IV36 788 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 ZNF654Q8IZM8 581 aa9.08□□□□□ -0.96
CPNE3-207ENST00000523588 GRIN3BO60391 1043 aa9.07□□□□□ -0.96
CPNE3-207ENST00000523588 PGRP06401 933 aa9.07□□□□□ -0.96
CPNE3-207ENST00000523588 OGFOD3Q6PK18 319 aa9.07□□□□□ -0.96
CPNE3-207ENST00000523588 TJP2Q9UDY2 1190 aa9.07□□□□□ -0.96
CPNE3-207ENST00000523588 ADAM30Q9UKF2 790 aa9.07□□□□□ -0.96
CPNE3-207ENST00000523588 PDE4BQ07343 736 aa9.06□□□□□ -0.96
CPNE3-207ENST00000523588 CWF19L2Q2TBE0 894 aaKnown RBP9.06□□□□□ -0.96
CPNE3-207ENST00000523588 ARMCX6Q7L4S7 300 aa9.06□□□□□ -0.96
CPNE3-207ENST00000523588 SLITRK4Q8IW52 837 aa9.06□□□□□ -0.96
CPNE3-207ENST00000523588 ACSF2Q96CM8 615 aaPredicted RBP9.06□□□□□ -0.96
CPNE3-207ENST00000523588 BRMS1Q9HCU9 246 aa9.06□□□□□ -0.96
CPNE3-207ENST00000523588 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.06□□□□□ -0.96
CPNE3-207ENST00000523588 LEFTY1O75610 366 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 FAM87AP0C7U9 286 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 APOBRQ0VD83 1088 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 SEZ6Q53EL9 994 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 TMEM201Q5SNT2 666 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 ZNF765Q7L2R6 523 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 MRPL41Q8IXM3 137 aaKnown RBP9.05□□□□□ -0.96
CPNE3-207ENST00000523588 DUSP23Q9BVJ7 150 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 FOXQ1Q9C009 403 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 TGIF2Q9GZN2 237 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 ATG3Q9NT62 314 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 RNF112Q9ULX5 631 aa9.05□□□□□ -0.96
CPNE3-207ENST00000523588 LRIG2O94898 1065 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 HTR3BO95264 441 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 TGFB1P01137 390 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 PLCG1P19174 1290 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 MCATQ8IVS2 390 aaKnown RBP9.04□□□□□ -0.96
CPNE3-207ENST00000523588 TOP6BLQ8N6T0 577 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 TMEM87BQ96K49 555 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 OSBPL1AQ9BXW6 950 aa9.04□□□□□ -0.96
CPNE3-207ENST00000523588 ATE1O95260 518 aa9.03□□□□□ -0.96
CPNE3-207ENST00000523588 CST3P01034 146 aaPredicted RBP9.03□□□□□ -0.96
CPNE3-207ENST00000523588 PAK2Q13177 524 aa9.03□□□□□ -0.96
CPNE3-207ENST00000523588 CPSF6Q16630 551 aaKnown RBP eCLIP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms