RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 ZNF280CQ8ND82 737 aa19.49■□□□□ 0.71
LMNA-223ENST00000515459 CDCA7LQ96GN5 454 aa19.49■□□□□ 0.71
LMNA-223ENST00000515459 PAWRQ96IZ0 340 aaKnown RBP19.49■□□□□ 0.71
LMNA-223ENST00000515459 MEIS3Q99687 375 aa19.49■□□□□ 0.71
LMNA-223ENST00000515459 TBC1D2Q9BYX2 928 aa19.49■□□□□ 0.71
LMNA-223ENST00000515459 COL2A1P02458 1487 aaPredicted RBP19.48■□□□□ 0.71
LMNA-223ENST00000515459 FAM196BA6NMK8 535 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 MAP4K4O95819 1239 aaPredicted RBP19.48■□□□□ 0.71
LMNA-223ENST00000515459 LDHCP07864 332 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 CT47B1P0C2W7 299 aaPredicted RBP19.48■□□□□ 0.71
LMNA-223ENST00000515459 GSTO1P78417 241 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 TFCP2Q12800 502 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 PABPC4Q13310 644 aaKnown RBP eCLIP19.48■□□□□ 0.71
LMNA-223ENST00000515459 NECAB2Q7Z6G3 386 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 ZNF384Q8TF68 577 aa19.48■□□□□ 0.71
LMNA-223ENST00000515459 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.48■□□□□ 0.71
LMNA-223ENST00000515459 HMGCRP04035 888 aa19.47■□□□□ 0.71
LMNA-223ENST00000515459 NEUROD6Q96NK8 337 aa19.47■□□□□ 0.71
LMNA-223ENST00000515459 STAP2Q9UGK3 403 aa19.47■□□□□ 0.71
LMNA-223ENST00000515459 SRGAP3O43295 1099 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 CAP2P40123 477 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 HMGCS2P54868 508 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 ANKLE1Q8NAG6 615 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 SPATA5Q8NB90 893 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 NSUN4Q96CB9 384 aaKnown RBP19.46■□□□□ 0.71
LMNA-223ENST00000515459 HMG20BQ9P0W2 317 aa19.46■□□□□ 0.71
LMNA-223ENST00000515459 USP17L5A8MUK1 530 aa19.45■□□□□ 0.7
LMNA-223ENST00000515459 SOX1O00570 391 aaPredicted RBP19.45■□□□□ 0.7
LMNA-223ENST00000515459 TRMT2AQ8IZ69 625 aaKnown RBP19.45■□□□□ 0.7
LMNA-223ENST00000515459 DIS3LQ8TF46 1054 aaKnown RBP19.45■□□□□ 0.7
LMNA-223ENST00000515459 ASCC2Q9H1I8 757 aaPredicted RBP19.45■□□□□ 0.7
LMNA-223ENST00000515459 HMX1Q9NP08 348 aaPredicted RBP19.45■□□□□ 0.7
LMNA-223ENST00000515459 RPTORQ8N122 1335 aa19.45■□□□□ 0.7
LMNA-223ENST00000515459 MTX1Q13505 466 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 SH3D19Q5HYK7 790 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 GORABQ5T7V8 394 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 TBC1D9Q6ZT07 1266 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 SLC17A8Q8NDX2 589 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 AS3MTQ9HBK9 375 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 RAI14Q9P0K7 980 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 HERC5Q9UII4 1024 aaKnown RBP19.44■□□□□ 0.7
LMNA-223ENST00000515459 GJD2Q9UKL4 321 aa19.44■□□□□ 0.7
LMNA-223ENST00000515459 GNAI3P08754 354 aa19.43■□□□□ 0.7
LMNA-223ENST00000515459 PI16Q6UXB8 463 aa19.43■□□□□ 0.7
LMNA-223ENST00000515459 LRCH3Q96II8 777 aa19.43■□□□□ 0.7
LMNA-223ENST00000515459 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.43■□□□□ 0.7
LMNA-223ENST00000515459 PLXNB2O15031 1838 aa19.43■□□□□ 0.7
LMNA-223ENST00000515459 DDX60LQ5H9U9 1706 aaKnown RBP19.42■□□□□ 0.7
LMNA-223ENST00000515459 ARID4AP29374 1257 aaPredicted RBP19.42■□□□□ 0.7
LMNA-223ENST00000515459 BMP8BP34820 402 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 RRP1BQ14684 758 aaKnown RBP19.42■□□□□ 0.7
LMNA-223ENST00000515459 TEX11Q8IYF3 940 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 C7orf61Q8IZ16 206 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 GDF15Q99988 308 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 NBPF3Q9H094 633 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 MORF4L1Q9UBU8 362 aa19.42■□□□□ 0.7
LMNA-223ENST00000515459 TRIM32Q13049 653 aa19.41■□□□□ 0.7
LMNA-223ENST00000515459 NOL10Q9BSC4 688 aaKnown RBP19.41■□□□□ 0.7
LMNA-223ENST00000515459 LRP2BPQ9P2M1 347 aa19.41■□□□□ 0.7
LMNA-223ENST00000515459 PI4KBQ9UBF8 816 aa19.41■□□□□ 0.7
LMNA-223ENST00000515459 SIPA1L1O43166 1804 aa19.41■□□□□ 0.7
LMNA-223ENST00000515459 DLL1O00548 723 aa19.4■□□□□ 0.7
LMNA-223ENST00000515459 IRX3P78415 501 aaPredicted RBP19.4■□□□□ 0.7
LMNA-223ENST00000515459 ARHGAP45Q92619 1136 aa19.4■□□□□ 0.7
LMNA-223ENST00000515459 WDR18Q9BV38 432 aa19.4■□□□□ 0.7
LMNA-223ENST00000515459 DHX36Q9H2U1 1008 aaKnown RBP19.4■□□□□ 0.7
LMNA-223ENST00000515459 TMOD4Q9NZQ9 345 aa19.4■□□□□ 0.7
LMNA-223ENST00000515459 ASNSP08243 561 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 MCAMP43121 646 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 BACE1P56817 501 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 MTMR2Q13614 643 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 SH3RF3Q8TEJ3 882 aaPredicted RBP19.39■□□□□ 0.69
LMNA-223ENST00000515459 TRIB2Q92519 343 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 C11orf49Q9H6J7 331 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 OGDHLQ9ULD0 1010 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 ZMYND8Q9ULU4 1186 aaPredicted RBP19.39■□□□□ 0.69
LMNA-223ENST00000515459 MAST2Q6P0Q8 1798 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 CDK5RAP2Q96SN8 1893 aa19.39■□□□□ 0.69
LMNA-223ENST00000515459 BAG3O95817 575 aa19.38■□□□□ 0.69
LMNA-223ENST00000515459 UQCRFS1P1P0C7P4 283 aa19.38■□□□□ 0.69
LMNA-223ENST00000515459 CYP2B6P20813 491 aa19.38■□□□□ 0.69
LMNA-223ENST00000515459 HOXA7P31268 230 aaPredicted RBP19.38■□□□□ 0.69
LMNA-223ENST00000515459 MNX1P50219 401 aaPredicted RBP19.38■□□□□ 0.69
LMNA-223ENST00000515459 RARSP54136 660 aaKnown RBP19.38■□□□□ 0.69
LMNA-223ENST00000515459 GPR153Q6NV75 609 aa19.38■□□□□ 0.69
LMNA-223ENST00000515459 NUDT12Q9BQG2 462 aa19.38■□□□□ 0.69
LMNA-223ENST00000515459 FOCADQ5VW36 1801 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 C19orf81C9J6K1 198 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 PLCG2P16885 1265 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 G3BP1Q13283 466 aaKnown RBP eCLIP19.37■□□□□ 0.691e-8■■■□□ 15.3
LMNA-223ENST00000515459 MAP3K21Q5TCX8 1036 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 NAA16Q6N069 864 aaPredicted RBP19.37■□□□□ 0.69
LMNA-223ENST00000515459 GPRC5AQ8NFJ5 357 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 SOCS4Q8WXH5 440 aa19.37■□□□□ 0.69
LMNA-223ENST00000515459 P2RX7Q99572 595 aaKnown RBP19.37■□□□□ 0.69
LMNA-223ENST00000515459 AATFQ9NY61 560 aaKnown RBP eCLIP19.37■□□□□ 0.69
LMNA-223ENST00000515459 LAMA3Q16787 3333 aa19.36■□□□□ 0.69
LMNA-223ENST00000515459 XRCC5P13010 732 aaKnown RBP19.36■□□□□ 0.69
LMNA-223ENST00000515459 PRKAR2AP13861 404 aaKnown RBP19.36■□□□□ 0.69
LMNA-223ENST00000515459 SYN1P17600 705 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms