RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CTU1Q7Z7A3 348 aaKnown RBP13.95□□□□□ -0.18
VCAN-212ENST00000515397 EXOC6Q8TAG9 804 aa13.95□□□□□ -0.18
VCAN-212ENST00000515397 CD99L2Q8TCZ2 262 aa13.95□□□□□ -0.18
VCAN-212ENST00000515397 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.95□□□□□ -0.18
VCAN-212ENST00000515397 HAUS7Q99871 368 aa13.95□□□□□ -0.18
VCAN-212ENST00000515397 MAGEB6P1A0A0J9YX57 407 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 TCRBV5S4A2TA0A5A2 114 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 TRIM75PA6NK02 468 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 PRKAB2O43741 272 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 TBC1D12O60347 775 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 GDF11O95390 407 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 MOGSQ13724 837 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 LCORLQ8N3X6 602 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 RIOK1Q9BRS2 568 aaKnown RBP13.94□□□□□ -0.18
VCAN-212ENST00000515397 CFHR5Q9BXR6 569 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 DNAJC18Q9H819 358 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 ARMT1Q9H993 441 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 ZFYVE28Q9HCC9 887 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 PI4KBQ9UBF8 816 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 KCNH4Q9UQ05 1017 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 AFG3L2Q9Y4W6 797 aa13.94□□□□□ -0.18
VCAN-212ENST00000515397 IRX6P78412 446 aaPredicted RBP13.93□□□□□ -0.18
VCAN-212ENST00000515397 ANKRD45Q5TZF3 282 aa13.93□□□□□ -0.18
VCAN-212ENST00000515397 GADL1Q6ZQY3 521 aa13.93□□□□□ -0.18
VCAN-212ENST00000515397 CRACR2BQ8N4Y2 399 aaPredicted RBP13.93□□□□□ -0.18
VCAN-212ENST00000515397 SDR42E1Q8WUS8 393 aa13.93□□□□□ -0.18
VCAN-212ENST00000515397 ECHDC1Q9NTX5 307 aa13.93□□□□□ -0.18
VCAN-212ENST00000515397 PDHXO00330 501 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 CXCL11O14625 94 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 CYP2D6P10635 497 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 ADD2P35612 726 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 CAP2P40123 477 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 PLCD1P51178 756 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 SP3Q02447 781 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 SPP2Q13103 211 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 GPAT2Q6NUI2 795 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 TRIM34Q9BYJ4 488 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 DHX36Q9H2U1 1008 aaKnown RBP13.92□□□□□ -0.18
VCAN-212ENST00000515397 CPA4Q9UI42 421 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 TRIM17Q9Y577 477 aa13.92□□□□□ -0.18
VCAN-212ENST00000515397 SMIM22K7EJ46 135 aa13.91□□□□□ -0.18
VCAN-212ENST00000515397 MBD4O95243 580 aa13.91□□□□□ -0.18
VCAN-212ENST00000515397 CYP2C8P10632 490 aa13.91□□□□□ -0.18
VCAN-212ENST00000515397 FOXP4Q8IVH2 680 aaPredicted RBP13.91□□□□□ -0.18
VCAN-212ENST00000515397 ARHGAP39Q9C0H5 1083 aa13.91□□□□□ -0.18
VCAN-212ENST00000515397 IGHDP01880 384 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 POLR3DP05423 398 aaPredicted RBP13.9□□□□□ -0.18
VCAN-212ENST00000515397 HLA-DOAP06340 250 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 NOM1Q5C9Z4 860 aaKnown RBP13.9□□□□□ -0.18
VCAN-212ENST00000515397 B4GALNT3Q6L9W6 998 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 OTOP1Q7RTM1 612 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 ANKRD23Q86SG2 305 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 CRNKL1Q9BZJ0 848 aaKnown RBP13.9□□□□□ -0.18
VCAN-212ENST00000515397 PUS7LQ9H0K6 701 aaKnown RBP13.9□□□□□ -0.18
VCAN-212ENST00000515397 MCM9Q9NXL9 1143 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 HERC5Q9UII4 1024 aaKnown RBP13.9□□□□□ -0.18
VCAN-212ENST00000515397 HPS5Q9UPZ3 1129 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 DOCK2Q92608 1830 aa13.9□□□□□ -0.18
VCAN-212ENST00000515397 CYP2D7A0A087X1C5 515 aa13.89□□□□□ -0.19
VCAN-212ENST00000515397 A0A0G2JLL6 359 aaPredicted RBP13.89□□□□□ -0.19
VCAN-212ENST00000515397 TLR2O60603 784 aa13.89□□□□□ -0.19
VCAN-212ENST00000515397 HMGCS2P54868 508 aa13.89□□□□□ -0.19
VCAN-212ENST00000515397 TREML2Q5T2D2 321 aa13.89□□□□□ -0.19
VCAN-212ENST00000515397 PRRT2Q7Z6L0 340 aaPredicted RBP13.89□□□□□ -0.19
VCAN-212ENST00000515397 USP17L5A8MUK1 530 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 IGSF3O75054 1194 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 GH2P01242 217 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 SOX10P56693 466 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 METTL16Q86W50 562 aaKnown RBP13.88□□□□□ -0.19
VCAN-212ENST00000515397 SLC44A5Q8NCS7 719 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 ZNF280CQ8ND82 737 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 DYNLL2Q96FJ2 89 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 ERO1AQ96HE7 468 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 GPATCH3Q96I76 525 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.88□□□□□ -0.19
VCAN-212ENST00000515397 EFCC1Q9HA90 598 aa13.88□□□□□ -0.19
VCAN-212ENST00000515397 DCP1AQ9NPI6 582 aaPredicted RBP13.88□□□□□ -0.19
VCAN-212ENST00000515397 COL2A1P02458 1487 aaPredicted RBP13.87□□□□□ -0.19
VCAN-212ENST00000515397 MAST2Q6P0Q8 1798 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 CTGFP29279 349 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 HDAC1Q13547 482 aaPredicted RBP13.87□□□□□ -0.19
VCAN-212ENST00000515397 C17orf99Q6UX52 265 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 FASTKD5Q7L8L6 764 aaKnown RBP13.87□□□□□ -0.19
VCAN-212ENST00000515397 TTC6Q86TZ1 520 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 STK11IPQ8N1F8 1099 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 KBTBD3Q8NAB2 608 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 PI4K2BQ8TCG2 481 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 OSBP2Q969R2 916 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 SERPINB13Q9UIV8 391 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 ZBTB21Q9ULJ3 1066 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 SLC4A4Q9Y6R1 1079 aa13.87□□□□□ -0.19
VCAN-212ENST00000515397 SIPA1L1O43166 1804 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 PEX10O60683 326 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 MTMR2Q13614 643 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 RAB3GAP1Q15042 981 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 UBE3CQ15386 1083 aa13.86□□□□□ -0.19
VCAN-212ENST00000515397 ZYXQ15942 572 aaKnown RBP13.86□□□□□ -0.19
VCAN-212ENST00000515397 PKN2Q16513 984 aaKnown RBP13.86□□□□□ -0.19
VCAN-212ENST00000515397 FBXO46Q6PJ61 603 aaPredicted RBP13.86□□□□□ -0.19
VCAN-212ENST00000515397 CERS3Q8IU89 383 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms