RNA–Protein interactions for RNA: ENST00000513632.2

PABPC4-218, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 2

Gene PABPC4, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-218	ENST00000513632	ATRNL1	Q5VV63	1379 aa		11.16	□□□□□ -0.62
PABPC4-218	ENST00000513632	USP17L5	A8MUK1	530 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	SGPL1	O95470	568 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	GCLC	P48506	637 aa	Predicted RBP	11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	SPP2	Q13103	211 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	IRF5	Q13568	498 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	TTC39A	Q5SRH9	613 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	TBC1D9	Q6ZT07	1266 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	ANKRD13C	Q8N6S4	541 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	ZNF280C	Q8ND82	737 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	U2AF1L4	Q8WU68	220 aa	Known RBP	11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	CLUAP1	Q96AJ1	413 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	DHX36	Q9H2U1	1008 aa	Known RBP	11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	PI4KB	Q9UBF8	816 aa		11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	HERC5	Q9UII4	1024 aa	Known RBP	11.15	□□□□□ -0.62
PABPC4-218	ENST00000513632	OTOF	Q9HC10	1997 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	LAMB1	P07942	1786 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	IGSF3	O75054	1194 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	FARP2	O94887	1054 aa	Predicted RBP	11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	TRIM27	P14373	513 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	CAP2	P40123	477 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	FXR1	P51114	621 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	FAM110C	Q1W6H9	321 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	NAA16	Q6N069	864 aa	Predicted RBP	11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	CHRDL2	Q6WN34	429 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	SHISA4	Q96DD7	197 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	UNC93B1	Q9H1C4	597 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	GPR108	Q9NPR9	543 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	TMOD4	Q9NZQ9	345 aa		11.14	□□□□□ -0.63
PABPC4-218	ENST00000513632	KIAA0100	Q14667	2235 aa	Known RBP	11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	PNMA6E	A0A0J9YXQ4	647 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	BCAR3	O75815	825 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	INHA	P05111	366 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	SLURP2	P0DP57	97 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	ELN	P15502	786 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	MCAM	P43121	646 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	HMGCS2	P54868	508 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	TREML2	Q5T2D2	321 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	ZKSCAN2	Q63HK3	967 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	PI16	Q6UXB8	463 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	CCDC84	Q86UT8	332 aa	Predicted RBP	11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	RFX7	Q2KHR2	1363 aa		11.13	□□□□□ -0.63
PABPC4-218	ENST00000513632	HTT	P42858	3142 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	FAM196B	A6NMK8	535 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	EVI5	O60447	810 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	SURF6	O75683	361 aa	Known RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	ASNS	P08243	561 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	IRX3	P78415	501 aa	Predicted RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	CCAR1	Q8IX12	1150 aa	Known RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	FTSJ3	Q8IY81	847 aa	Known RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	ZNF384	Q8TF68	577 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	DEFB118	Q96PH6	123 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	GINM1	Q9NU53	330 aa		11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.12	□□□□□ -0.63
PABPC4-218	ENST00000513632	C19orf81	C9J6K1	198 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	HLA-DOA	P06340	250 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	PPP4C	P60510	307 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	ATP8B2	P98198	1209 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	TNNI3K	Q59H18	835 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	SH3D19	Q5HYK7	790 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	UBE2Q1	Q7Z7E8	422 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	CERS3	Q8IU89	383 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	TGFBRAP1	Q8WUH2	860 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	WDR18	Q9BV38	432 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	ASCC2	Q9H1I8	757 aa	Predicted RBP	11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	SNRK	Q9NRH2	765 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	FPGT-TNNI3K	V9GXZ4	949 aa		11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	MKI67	P46013	3256 aa	Known RBP	11.11	□□□□□ -0.63
PABPC4-218	ENST00000513632	USP17L10	C9JJH3	530 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	HMGCR	P04035	888 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	BACE1	P56817	501 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	POLA2	Q14181	598 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	NECAB2	Q7Z6G3	386 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	MAPKAPK5	Q8IW41	473 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	TMEM57	Q8N5G2	664 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	DBNDD2	Q9BQY9	259 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	HMX1	Q9NP08	348 aa	Predicted RBP	11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	RBM27	Q9P2N5	1060 aa	Known RBP	11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	COL2A1	P02458	1487 aa	Predicted RBP	11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	CENPF	P49454	3210 aa		11.1	□□□□□ -0.63
PABPC4-218	ENST00000513632	CYP2E1	P05181	493 aa	Predicted RBP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	HOXA7	P31268	230 aa	Predicted RBP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	MTMR2	Q13614	643 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	PDE3A	Q14432	1141 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	ITPRIP	Q8IWB1	547 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	ANKLE1	Q8NAG6	615 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	SSH3	Q8TE77	659 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	NUDT12	Q9BQG2	462 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	CWC22	Q9HCG8	908 aa	Known RBP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	PAK6	Q9NQU5	681 aa	Predicted RBP	11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	TNN	Q9UQP3	1299 aa		11.09	□□□□□ -0.63
PABPC4-218	ENST00000513632	BRCA2	P51587	3418 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms