RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 NOS2P35228 1153 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 PTK7Q13308 1070 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 ZBTB3Q9H5J0 574 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 RREB1Q92766 1687 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 TNS1Q9HBL0 1735 aaKnown RBP11.28□□□□□ -0.6
USP53-207ENST00000510852 MYH14Q7Z406 1995 aaKnown RBP11.28□□□□□ -0.6
USP53-207ENST00000510852 GNPATO15228 680 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 CTAGE5O15320 804 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 TSPAN6O43657 245 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 ECEL1O95672 775 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 CASP2P42575 452 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 SEC13P55735 322 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 MDM2Q00987 491 aaPredicted RBP11.28□□□□□ -0.6
USP53-207ENST00000510852 ERAP2Q6P179 960 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 E2F7Q96AV8 911 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 METTL22Q9BUU2 404 aaPredicted RBP11.28□□□□□ -0.6
USP53-207ENST00000510852 SRCIN1Q9C0H9 1055 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 TAGLN3Q9UI15 199 aa11.28□□□□□ -0.6
USP53-207ENST00000510852 MAFBQ9Y5Q3 323 aaPredicted RBP11.28□□□□□ -0.6
USP53-207ENST00000510852 ZBTB7BO15156 539 aaPredicted RBP11.27□□□□□ -0.6
USP53-207ENST00000510852 RPS6KA4O75676 772 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 MYL1P05976 194 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 CAMK2BQ13554 666 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 PLEKHG4Q58EX7 1191 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 JAKMIP3Q5VZ66 844 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 MRFAP1L1Q96HT8 127 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 PAWRQ96IZ0 340 aaKnown RBP11.27□□□□□ -0.6
USP53-207ENST00000510852 SERINC2Q96SA4 455 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 MYD88Q99836 296 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 POLR3CQ9BUI4 534 aaPredicted RBP11.27□□□□□ -0.6
USP53-207ENST00000510852 MAP3K15Q6ZN16 1313 aa11.27□□□□□ -0.6
USP53-207ENST00000510852 ATP10DQ9P241 1426 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 K7ELQ4 463 aaPredicted RBP11.27□□□□□ -0.61
USP53-207ENST00000510852 EN1Q05925 392 aaPredicted RBP11.27□□□□□ -0.61
USP53-207ENST00000510852 FAM161AQ3B820 660 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 MYSM1Q5VVJ2 828 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 C16orf54Q6UWD8 224 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 SMIM5Q71RC9 77 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 NELL2Q99435 816 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 PRKAB1Q9Y478 270 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 COL15A1P39059 1388 aa11.27□□□□□ -0.61
USP53-207ENST00000510852 FIBPO43427 364 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 TPPPO94811 219 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 IGKV5-2P06315 115 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 CCDC175P0C221 793 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 HMGB2P26583 209 aaKnown RBP11.26□□□□□ -0.61
USP53-207ENST00000510852 NFE2Q16621 373 aaPredicted RBP11.26□□□□□ -0.61
USP53-207ENST00000510852 AMIGO3Q86WK7 504 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 LINS1Q8NG48 757 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 MPP4Q96JB8 637 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 CAMKK2Q96RR4 588 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 ANO2Q9NQ90 1003 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 ZBTB40Q9NUA8 1239 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 USP25Q9UHP3 1055 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 RTCBQ9Y3I0 505 aaKnown RBP11.26□□□□□ -0.61
USP53-207ENST00000510852 C4BP0C0L5 1744 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 A0A087WZG4 1122 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 PPP2R5BQ15173 497 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 EZH2Q15910 746 aaKnown RBP11.26□□□□□ -0.61
USP53-207ENST00000510852 HLFQ16534 295 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 CWF19L2Q2TBE0 894 aaKnown RBP11.26□□□□□ -0.61
USP53-207ENST00000510852 PDXDC2PQ6P474 469 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 C14orf80Q86SX3 495 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 SNX32Q86XE0 403 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 PHC3Q8NDX5 983 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 HOMER2Q9NSB8 354 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 PPP4R2Q9NY27 417 aa11.26□□□□□ -0.61
USP53-207ENST00000510852 TRIM6-TRIM34B2RNG4 842 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 ERVV-1B6SEH8 477 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 ATP5J2-PTCD1G3V325 749 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 ALDH1L1O75891 902 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 IPO7O95373 1038 aaKnown RBP11.25□□□□□ -0.61
USP53-207ENST00000510852 BAG6P46379 1132 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 ANKRD45Q5TZF3 282 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 APPL2Q8NEU8 664 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 MEIS3Q99687 375 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 BEGAINQ9BUH8 593 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 TAF1LQ8IZX4 1826 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 NEURL1BA8MQ27 555 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 CAMTA2O94983 1202 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 RASA1P20936 1047 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 OAS2P29728 719 aaKnown RBP11.25□□□□□ -0.61
USP53-207ENST00000510852 SOGA3Q5TF21 947 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 MCF2L2Q86YR7 1114 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 SAMD14Q8IZD0 417 aaPredicted RBP11.25□□□□□ -0.61
USP53-207ENST00000510852 IFNL3Q8IZI9 196 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 C12orf49Q9H741 205 aa11.25□□□□□ -0.61
USP53-207ENST00000510852 C19orf81C9J6K1 198 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 ORC4O43929 436 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 INHBEP58166 350 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 TCIRG1Q13488 830 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 DEFB132Q7Z7B7 95 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 ZFPM2Q8WW38 1151 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 TBC1D31Q96DN5 1066 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 IWS1Q96ST2 819 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 MAP3K14Q99558 947 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 USP44Q9H0E7 712 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 DHX36Q9H2U1 1008 aaKnown RBP11.24□□□□□ -0.61
USP53-207ENST00000510852 KANSL2Q9H9L4 492 aa11.24□□□□□ -0.61
USP53-207ENST00000510852 RIC8AQ9NPQ8 531 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms