RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SH3RF1Q7Z6J0 888 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 ZNF34Q8IZ26 560 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 DPF2Q92785 391 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 EPB41L4AQ9HCS5 686 aaPredicted RBP10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 GJB4Q9NTQ9 266 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 IQSEC3Q9UPP2 1182 aaPredicted RBP10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 PCDHA5Q9Y5H7 936 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 FHOD1Q9Y613 1164 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 PARP3Q9Y6F1 533 aa10.6□□□□□ -0.71
PDGFRA-208ENST00000509490 CCDC196A0A1B0GTZ2 297 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 VWA3AA6NCI4 1184 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 DEXIO95424 95 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 LMOD1P29536 600 aaPredicted RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TUBB4BP68371 445 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 MAP3K9P80192 1104 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TUBB2AQ13885 445 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TAF7LQ5H9L4 462 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 AKNAD1Q5T1N1 836 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TOM1L2Q6ZVM7 507 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 IFNL3Q8IZI9 196 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 FAM89AQ96GI7 184 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 PANX2Q96RD6 677 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TUBB2BQ9BVA1 445 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 GREM2Q9H772 168 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TMOD3Q9NYL9 352 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 MAN1B1Q9UKM7 699 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 CEP131Q9UPN4 1083 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 COL14A1Q05707 1796 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TOP1P11387 765 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 CNNM3Q8NE01 707 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 DDX17Q92841 729 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 NAA15Q9BXJ9 866 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 AATFQ9NY61 560 aaKnown RBP eCLIP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 KIAA1551Q9HCM1 1747 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 A0A1B0GTH6 734 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 ACTN4O43707 911 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 BMP15O95972 392 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 FGRP09769 529 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 PCP11498 1178 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 CYP19A1P11511 503 aaPredicted RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 MARCKSP29966 332 aaPredicted RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 PBX1P40424 430 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 NT5C2P49902 561 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 PNOCQ13519 176 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 NR1I3Q14994 352 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 POSTNQ15063 836 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 TMEM67Q5HYA8 995 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 RSRC2Q7L4I2 434 aaKnown RBP10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 PRDM11Q9NQV5 511 aa10.59□□□□□ -0.71
PDGFRA-208ENST00000509490 DUOX1Q9NRD9 1551 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 GSG1L2A8MUP6 293 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 FANCGO15287 622 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 SPECC1LQ69YQ0 1117 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 PI16Q6UXB8 463 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 APTXQ7Z2E3 356 aaKnown RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 NUTM2AQ8IVF1 878 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 CRACR2BQ8N4Y2 399 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 TC2NQ8N9U0 490 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 AIFM3Q96NN9 605 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 RNF26Q9BY78 433 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 FANCLQ9NW38 375 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 ZSWIM5Q9P217 1185 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 PPP2R2CQ9Y2T4 447 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 CCDC9Q9Y3X0 531 aaKnown RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 TACC3Q9Y6A5 838 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 ITIH6Q6UXX5 1313 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 B4E1Z4 1266 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 BIN1O00499 593 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 IL6STP40189 918 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 PLCD1P51178 756 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 CLCN6P51797 869 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 PDE4BQ07343 736 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 SAFBQ15424 915 aaKnown RBP eCLIP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 DNAJC10Q8IXB1 793 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 SPATA5Q8NB90 893 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 RNF41Q9H4P4 317 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 ARGLU1Q9NWB6 273 aaPredicted RBP10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 WWC3Q9ULE0 1092 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 SLC12A7Q9Y666 1083 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 SCN7AQ01118 1682 aa10.58□□□□□ -0.72
PDGFRA-208ENST00000509490 IRS4O14654 1257 aaPredicted RBP10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 SERPINC1P01008 464 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 MAP3K12Q12852 859 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 SEMA3FQ13275 785 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 PIGBQ92521 554 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 KIFC2Q96AC6 838 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 SENP2Q9HC62 589 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 DENND2AQ9ULE3 1009 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 MYH6P13533 1939 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 PHKA1P46020 1223 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 ERCC6LQ2NKX8 1250 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 CDKAL1Q5VV42 579 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 TRIM22Q8IYM9 498 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 GPR161Q8N6U8 529 aaKnown RBP10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 AIDAQ96BJ3 306 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 CCDC51Q96ER9 411 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 MRFAP1Q9Y605 127 aa10.57□□□□□ -0.72
PDGFRA-208ENST00000509490 SLC5A1P13866 664 aa10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 GTF2E1P29083 439 aaPredicted RBP10.56□□□□□ -0.72
PDGFRA-208ENST00000509490 CACNA1SQ13698 1873 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms