RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 FOXD3Q9UJU5 478 aaPredicted RBP8.7□□□□□ -1.02
CLCN3-206ENST00000507875 HPS5Q9UPZ3 1129 aa8.7□□□□□ -1.02
CLCN3-206ENST00000507875 USP20Q9Y2K6 914 aa8.7□□□□□ -1.02
CLCN3-206ENST00000507875 SBF2Q86WG5 1849 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 KCPQ6ZWJ8 1503 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 NR1I2O75469 434 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 FOXK2Q01167 660 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 ZNF790Q6PG37 636 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 TTC5Q8N0Z6 440 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 LILRB2Q8N423 598 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 TSPYL6Q8N831 410 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 SH3TC2Q8TF17 1288 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 FMNL2Q96PY5 1086 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 TEX13AQ9BXU3 409 aaPredicted RBP8.69□□□□□ -1.02
CLCN3-206ENST00000507875 DDX19BQ9UMR2 479 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 RREB1Q92766 1687 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 DNAJC6O75061 913 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 SSBP05455 408 aaKnown RBP eCLIP8.69□□□□□ -1.02
CLCN3-206ENST00000507875 NOS2P35228 1153 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 VARS2Q5ST30 1063 aaKnown RBP8.69□□□□□ -1.02
CLCN3-206ENST00000507875 GORABQ5T7V8 394 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 JDP2Q8WYK2 163 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 SPC25Q9HBM1 224 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 ADAMTS1Q9UHI8 967 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 EFR3BQ9Y2G0 817 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 HCN4Q9Y3Q4 1203 aa8.69□□□□□ -1.02
CLCN3-206ENST00000507875 HMGB2P26583 209 aaKnown RBP8.68□□□□□ -1.02
CLCN3-206ENST00000507875 ERMP1Q7Z2K6 904 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 IER2Q9BTL4 223 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 NOB1Q9ULX3 412 aaKnown RBP8.68□□□□□ -1.02
CLCN3-206ENST00000507875 ABCC4O15439 1325 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 ESYT3A0FGR9 886 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 ERVK-9P63128 1117 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 MVPQ14764 893 aaKnown RBP8.68□□□□□ -1.02
CLCN3-206ENST00000507875 TKFCQ3LXA3 575 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 NXPE4Q6UWF7 544 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 CELF2-AS1Q8N7Q2 184 aa8.68□□□□□ -1.02
CLCN3-206ENST00000507875 KDM2BQ8NHM5 1336 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 PPFIA4O75335 1185 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 SNRPA1P09661 255 aaKnown RBP8.67□□□□□ -1.02
CLCN3-206ENST00000507875 USP17L7P0C7H9 530 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 PDE6BP35913 854 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 EZH2Q15910 746 aaKnown RBP8.67□□□□□ -1.02
CLCN3-206ENST00000507875 SOGA3Q5TF21 947 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 FRAT1Q92837 279 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-206ENST00000507875 CAMKK2Q96RR4 588 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 C12orf49Q9H741 205 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 HYPKQ9NX55 129 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 TMOD3Q9NYL9 352 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 DBF4Q9UBU7 674 aaPredicted RBP8.67□□□□□ -1.02
CLCN3-206ENST00000507875 TJP1Q07157 1748 aa8.67□□□□□ -1.02
CLCN3-206ENST00000507875 KLF4O43474 513 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 PPP4CP60510 307 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 CENPQQ7L2Z9 268 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 DEPDC7Q96QD5 511 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 C1QTNF2Q9BXJ5 285 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 SLC4A5Q9BY07 1137 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 GINM1Q9NU53 330 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 TTF2Q9UNY4 1162 aaKnown RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 S100BP04271 92 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 TRIM27P14373 513 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 SH3BP2P78314 561 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 TAF1CQ15572 869 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 INTS3Q68E01 1043 aaKnown RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 LAPTM4BQ86VI4 370 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 PGBD3Q8N328 593 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 DDX54Q8TDD1 881 aaKnown RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 EMID1Q96A84 441 aaPredicted RBP8.66□□□□□ -1.02
CLCN3-206ENST00000507875 NBPF3Q9H094 633 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 MIS18AQ9NYP9 233 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 ATP10DQ9P241 1426 aa8.66□□□□□ -1.02
CLCN3-206ENST00000507875 COL5A3P25940 1745 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 MINDY4BA8MYZ0 360 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 PLSCR1O15162 318 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 CCT4P50991 539 aaKnown RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 MARCH10Q8NA82 808 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 ZDHHC1Q8WTX9 485 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 ARFGEF2Q9Y6D5 1785 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 LY75O60449 1722 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 NUP188Q5SRE5 1749 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 TNS1Q9HBL0 1735 aaKnown RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 A6NJY4 79 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 POLR3DP05423 398 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 PAX3P23760 479 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 FBF1Q8TES7 1133 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 SMARCC1Q92922 1105 aaPredicted RBP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 DNAJC7Q99615 494 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 SPON2Q9BUD6 331 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 DDX21Q9NR30 783 aaKnown RBP eCLIP8.65□□□□□ -1.02
CLCN3-206ENST00000507875 PCDH10Q9P2E7 1040 aa8.65□□□□□ -1.02
CLCN3-206ENST00000507875 ELL2O00472 640 aaPredicted RBP8.64□□□□□ -1.03
CLCN3-206ENST00000507875 DDX58O95786 925 aaKnown RBP8.64□□□□□ -1.03
CLCN3-206ENST00000507875 PLEKHG4Q58EX7 1191 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 CCDC81Q6ZN84 652 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 ZNF784Q8NCA9 323 aaPredicted RBP8.64□□□□□ -1.03
CLCN3-206ENST00000507875 ANAPC16Q96DE5 110 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 HDAC5Q9UQL6 1122 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 BCS1LQ9Y276 419 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 BTAF1O14981 1849 aa8.64□□□□□ -1.03
CLCN3-206ENST00000507875 CHMP4BP1P59074 171 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms