RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 MYSM1Q5VVJ2 828 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 PNMA1Q8ND90 353 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 CAVIN2O95810 425 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 EXOC1Q9NV70 894 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 SIGLEC1Q9BZZ2 1709 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 SLIT1O75093 1534 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 ATP10DQ9P241 1426 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 POLR2DO15514 142 aaKnown RBP16.05■□□□□ 0.16
TCOF1-207ENST00000504761 GRAPQ13588 217 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 APOA5Q6Q788 366 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 LRRC47Q8N1G4 583 aaKnown RBP16.05■□□□□ 0.16
TCOF1-207ENST00000504761 GRAPLQ8TC17 118 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-207ENST00000504761 TSG101Q99816 390 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 ZSWIM5Q9P217 1185 aa16.05■□□□□ 0.16
TCOF1-207ENST00000504761 USP17L8P0C7I0 530 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 VPS72Q15906 364 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 PPP4R3BQ5MIZ7 849 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 FKBP15Q5T1M5 1219 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 PKD2L1Q9P0L9 805 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 KCNH3Q9ULD8 1083 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 USP32Q8NFA0 1604 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 MECOMQ03112 1051 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 NFIXQ14938 502 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 PTPN14Q15678 1187 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 PAXIP1Q6ZW49 1069 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-207ENST00000504761 CACNA2D4Q7Z3S7 1137 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 NIM1KQ8IY84 436 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 ITSN1Q15811 1721 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 EHMT1Q9H9B1 1298 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 ARID4AP29374 1257 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-207ENST00000504761 CUL4AQ13619 759 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 TXNRD1Q16881 649 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 CNKSR1Q969H4 720 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 STRBPQ96SI9 672 aaKnown RBP16.04■□□□□ 0.16
TCOF1-207ENST00000504761 MAPK8IP1Q9UQF2 711 aa16.04■□□□□ 0.16
TCOF1-207ENST00000504761 CDHR2Q9BYE9 1310 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 TCP10L2B9ZVM9 353 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 CCDC40Q4G0X9 1142 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 DYNLL2Q96FJ2 89 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 KAZALD1Q96I82 304 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 FTOQ9C0B1 505 aaKnown RBP eCLIP16.03■□□□□ 0.162e-6■□□□□ 9.3
TCOF1-207ENST00000504761 ATF5Q9Y2D1 282 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-207ENST00000504761 RIPOR2Q9Y4F9 1068 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 ODF2Q5BJF6 829 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 KRT79Q5XKE5 535 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 KIAA1328Q86T90 577 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 LINC00116Q8NCU8 138 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 PXDNQ92626 1479 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 FRMPD2Q68DX3 1309 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-207ENST00000504761 USH1GQ495M9 461 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 TTC38Q5R3I4 469 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 ATL3Q6DD88 541 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 IL25Q9H293 177 aa16.03■□□□□ 0.16
TCOF1-207ENST00000504761 MYCNP04198 464 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-207ENST00000504761 SP4Q02446 784 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 CPXCR1Q8N123 301 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 IQUBQ8NA54 791 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 NSUN7Q8NE18 718 aaKnown RBP16.02■□□□□ 0.16
TCOF1-207ENST00000504761 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.16
TCOF1-207ENST00000504761 AIFM3Q96NN9 605 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 UQCRHLA0A096LP55 91 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 ZNF202O95125 648 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 UQCRHP07919 91 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 TXKP42681 527 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 GJB4Q9NTQ9 266 aa16.02■□□□□ 0.16
TCOF1-207ENST00000504761 MRPL12P52815 198 aaKnown RBP16.02■□□□□ 0.15
TCOF1-207ENST00000504761 NKX1-1Q15270 411 aaPredicted RBP16.02■□□□□ 0.15
TCOF1-207ENST00000504761 GPT2Q8TD30 523 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 PYM1Q9BRP8 204 aaKnown RBP16.02■□□□□ 0.15
TCOF1-207ENST00000504761 ATP8A2Q9NTI2 1148 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 SPATA31A5Q5VU36 1347 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 SPATA31A7Q8IWB4 1347 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 CLRN2A0PK11 232 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 CCNT1O60563 726 aaKnown RBP16.02■□□□□ 0.15
TCOF1-207ENST00000504761 FBXO18Q8NFZ0 1043 aa16.02■□□□□ 0.15
TCOF1-207ENST00000504761 GRM1Q13255 1194 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 PPP1R12BO60237 982 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-207ENST00000504761 NR1I2O75469 434 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 CAMTA2O94983 1202 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 ARGLU1Q9NWB6 273 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-207ENST00000504761 ZBTB21Q9ULJ3 1066 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 CPDO75976 1380 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 MED23Q9ULK4 1368 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 RAD17O75943 681 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 SUPT20HQ8NEM7 779 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 ELP1O95163 1332 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 ZMYM6O95789 1325 aa16.01■□□□□ 0.15
TCOF1-207ENST00000504761 KLRF2D3W0D1 207 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 DNA2P51530 1060 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 CERS3Q8IU89 383 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 ZNF397Q8NF99 534 aaPredicted RBP16■□□□□ 0.15
TCOF1-207ENST00000504761 IFNKQ9P0W0 207 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 SEMA3EO15041 775 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 TDRD12Q587J7 1177 aaKnown RBP16■□□□□ 0.15
TCOF1-207ENST00000504761 ERMNQ8TAM6 284 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 KIF2CQ99661 725 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 MMRN2Q9H8L6 949 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 TNNT1P13805 278 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 ZNF34Q8IZ26 560 aa16■□□□□ 0.15
TCOF1-207ENST00000504761 CLSTN2Q9H4D0 955 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms