RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 SMARCC1Q92922 1105 aaPredicted RBP7.27□□□□□ -1.25
SSBP1-213ENST00000496622 HAUS7Q99871 368 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 PAG1Q9NWQ8 432 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 PAPPAQ13219 1627 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 GOLGA6L3A6NEY3 463 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 DHX16O60231 1041 aaKnown RBP7.27□□□□□ -1.25
SSBP1-213ENST00000496622 DDIT3P35638 169 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 MCAMP43121 646 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 MTA1Q13330 715 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 ATP2B3Q16720 1220 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 TNPO1Q92973 898 aaKnown RBP7.27□□□□□ -1.25
SSBP1-213ENST00000496622 JAKMIP1Q96N16 626 aaKnown RBP7.27□□□□□ -1.25
SSBP1-213ENST00000496622 TSPAN18Q96SJ8 248 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 MPHOSPH8Q99549 860 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 TRIM34Q9BYJ4 488 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 LRRC2Q9BYS8 371 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 MAP10Q9P2G4 905 aa7.27□□□□□ -1.25
SSBP1-213ENST00000496622 CCDC171Q6TFL3 1326 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 WNK3Q9BYP7 1800 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 GOLGA6CA6NDK9 693 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 GOLGA6BA6NDN3 693 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 LILRB3O75022 631 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 LARGE1O95461 756 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 GOLGA6DP0CG33 693 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 CTDSPL2Q05D32 466 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 FSTL1Q12841 308 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 NECTIN1Q15223 517 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 TTC39AQ5SRH9 613 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 TTLL5Q6EMB2 1281 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 PLA2G12BQ9BX93 195 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 GOLGA6AQ9NYA3 693 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 CHMP5Q9NZZ3 219 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 JAG2Q9Y219 1238 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 MRVI1Q9Y6F6 885 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 NPHP1O15259 732 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 PDE8BO95263 885 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 FOXD4Q12950 439 aaPredicted RBP7.26□□□□□ -1.25
SSBP1-213ENST00000496622 SKIV2LQ15477 1246 aaKnown RBP7.26□□□□□ -1.25
SSBP1-213ENST00000496622 ZKSCAN8Q15776 578 aaPredicted RBP7.26□□□□□ -1.25
SSBP1-213ENST00000496622 SH3D19Q5HYK7 790 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 CREB3L3Q68CJ9 461 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 CHST3Q7LGC8 479 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 APBB1IPQ7Z5R6 666 aaPredicted RBP7.26□□□□□ -1.25
SSBP1-213ENST00000496622 ANKRD23Q86SG2 305 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 VGLL2Q8N8G2 317 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 KBTBD3Q8NAB2 608 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 SLC17A8Q8NDX2 589 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 CELF1Q92879 486 aaKnown RBP7.26□□□□□ -1.25
SSBP1-213ENST00000496622 OSBP2Q969R2 916 aa7.26□□□□□ -1.25
SSBP1-213ENST00000496622 AFDNP55196 1824 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 N4BP2Q86UW6 1770 aaPredicted RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 ZNF609O15014 1411 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 IDH1O75874 414 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 CIAO1O76071 339 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 DXOO77932 396 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 KLRK1P26718 216 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 AK2P54819 239 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 HAND2P61296 217 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 WASHC4Q2M389 1173 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 CCDC158Q5M9N0 1113 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 MTERF4Q7Z6M4 381 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 NECAB1Q8N987 351 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 RUFY2Q8WXA3 655 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 MAP4K1Q92918 833 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 FHDC1Q9C0D6 1143 aaPredicted RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 PUS7LQ9H0K6 701 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 RTCBQ9Y3I0 505 aaKnown RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 CDHR2Q9BYE9 1310 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 SLC27A2O14975 620 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 CYP2E1P05181 493 aaPredicted RBP7.25□□□□□ -1.25
SSBP1-213ENST00000496622 MMP16P51512 607 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 MSS51Q4VC12 460 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 CCDC102BQ68D86 513 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 RUFY3Q7L099 469 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 ANKLE1Q8NAG6 615 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 RPS6KL1Q9Y6S9 549 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 LAMB4A4D0S4 1761 aa7.25□□□□□ -1.25
SSBP1-213ENST00000496622 ABCC12Q96J65 1359 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 M0R2C6 588 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 TNFRSF10AO00220 468 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 CYP21A2P08686 494 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 CCDC172P0C7W6 258 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 STK11IPQ8N1F8 1099 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 EPS8L1Q8TE68 723 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 LRRN4Q8WUT4 740 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 SETDB2Q96T68 719 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 NUDT12Q9BQG2 462 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 DENND2AQ9ULE3 1009 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 RIC1Q4ADV7 1423 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 COL4A1P02462 1669 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 TJP1Q07157 1748 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 RPS6KA4O75676 772 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 RFC4P35249 363 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 GYG1P46976 350 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 CTCFP49711 727 aaPredicted RBP7.24□□□□□ -1.25
SSBP1-213ENST00000496622 CHRNDQ07001 517 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 STK3Q13188 491 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 DIXDC1Q155Q3 683 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 MCMDC2Q4G0Z9 681 aa7.24□□□□□ -1.25
SSBP1-213ENST00000496622 PIH1D3Q9NQM4 214 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms