RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 SMCR8Q8TEV9 937 aaPredicted RBP15.59■□□□□ 0.09
SKA1-205ENST00000494518 NSUN4Q96CB9 384 aaKnown RBP15.59■□□□□ 0.09
SKA1-205ENST00000494518 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.59■□□□□ 0.09
SKA1-205ENST00000494518 SNRKQ9NRH2 765 aa15.59■□□□□ 0.09
SKA1-205ENST00000494518 TAOK2Q9UL54 1235 aa15.59■□□□□ 0.09
SKA1-205ENST00000494518 COLQQ9Y215 455 aaPredicted RBP15.59■□□□□ 0.09
SKA1-205ENST00000494518 FOCADQ5VW36 1801 aa15.59■□□□□ 0.09
SKA1-205ENST00000494518 RANBP2P49792 3224 aaKnown RBP15.58■□□□□ 0.08
SKA1-205ENST00000494518 CCER2I3L3R5 266 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 IPO8O15397 1037 aaKnown RBP15.58■□□□□ 0.08
SKA1-205ENST00000494518 ELNP15502 786 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 MAP3K10Q02779 954 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 TREML2Q5T2D2 321 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 TEX11Q8IYF3 940 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 TMEM57Q8N5G2 664 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 RNF208Q9H0X6 261 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 C1orf115Q9H7X2 142 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 SZT2Q5T011 3432 aa15.58■□□□□ 0.08
SKA1-205ENST00000494518 ARID4AP29374 1257 aaPredicted RBP15.57■□□□□ 0.08
SKA1-205ENST00000494518 GSTO1P78417 241 aa15.57■□□□□ 0.08
SKA1-205ENST00000494518 RRP1BQ14684 758 aaKnown RBP15.57■□□□□ 0.08
SKA1-205ENST00000494518 ANKRD13CQ8N6S4 541 aa15.57■□□□□ 0.08
SKA1-205ENST00000494518 SH3RF3Q8TEJ3 882 aaPredicted RBP15.57■□□□□ 0.08
SKA1-205ENST00000494518 OSBPL5Q9H0X9 879 aaPredicted RBP15.57■□□□□ 0.08
SKA1-205ENST00000494518 UNC93B1Q9H1C4 597 aa15.57■□□□□ 0.08
SKA1-205ENST00000494518 LRP2BPQ9P2M1 347 aa15.57■□□□□ 0.08
SKA1-205ENST00000494518 TNPO2O14787 897 aaKnown RBP15.56■□□□□ 0.08
SKA1-205ENST00000494518 ADCY3O60266 1144 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 LDHCP07864 332 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 FLT3LGP49771 235 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 UBXN2AP68543 259 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 OS9Q13438 667 aaPredicted RBP15.56■□□□□ 0.08
SKA1-205ENST00000494518 SLAIN1Q8ND83 568 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 DPF3Q92784 378 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 AATFQ9NY61 560 aaKnown RBP eCLIP15.56■□□□□ 0.08
SKA1-205ENST00000494518 AGTPBP1Q9UPW5 1226 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 MYH1P12882 1939 aa15.56■□□□□ 0.08
SKA1-205ENST00000494518 ALPK3Q96L96 1907 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 GJB1P08034 283 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 FXR1P51114 621 aaKnown RBP eCLIP15.55■□□□□ 0.08
SKA1-205ENST00000494518 HMGCS2P54868 508 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 SPP2Q13103 211 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 TTC39AQ5SRH9 613 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 DBNDD2Q9BQY9 259 aa15.55■□□□□ 0.08
SKA1-205ENST00000494518 TBC1D12O60347 775 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 INHAP05111 366 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 UQCRFS1P1P0C7P4 283 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 GJA8P48165 433 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 CHRDL2Q6WN34 429 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 MAPKAPK5Q8IW41 473 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 U2AF1L4Q8WU68 220 aaKnown RBP15.54■□□□□ 0.08
SKA1-205ENST00000494518 NOL10Q9BSC4 688 aaKnown RBP15.54■□□□□ 0.08
SKA1-205ENST00000494518 SLC45A1Q9Y2W3 748 aa15.54■□□□□ 0.08
SKA1-205ENST00000494518 COL2A1P02458 1487 aaPredicted RBP15.53■□□□□ 0.08
SKA1-205ENST00000494518 PLXNB2O15031 1838 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 SHROOM1Q2M3G4 852 aaPredicted RBP15.53■□□□□ 0.08
SKA1-205ENST00000494518 TNNI3KQ59H18 835 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 NAA16Q6N069 864 aaPredicted RBP15.53■□□□□ 0.08
SKA1-205ENST00000494518 ADGRA1Q86SQ6 560 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 ZNF280CQ8ND82 737 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 NKX2-3Q8TAU0 364 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 FPGT-TNNI3KV9GXZ4 949 aa15.53■□□□□ 0.08
SKA1-205ENST00000494518 FARP2O94887 1054 aaPredicted RBP15.52■□□□□ 0.08
SKA1-205ENST00000494518 CAP2P40123 477 aa15.52■□□□□ 0.08
SKA1-205ENST00000494518 ZKSCAN2Q63HK3 967 aa15.52■□□□□ 0.08
SKA1-205ENST00000494518 PROCA1Q8NCQ7 364 aaPredicted RBP15.52■□□□□ 0.08
SKA1-205ENST00000494518 TGFBRAP1Q8WUH2 860 aa15.52■□□□□ 0.08
SKA1-205ENST00000494518 PNMA3Q9UL41 463 aa15.52■□□□□ 0.08
SKA1-205ENST00000494518 USP17L5A8MUK1 530 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 PEX10O60683 326 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 SURF6O75683 361 aaKnown RBP15.51■□□□□ 0.07
SKA1-205ENST00000494518 GDF11O95390 407 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 CYP2E1P05181 493 aaPredicted RBP15.51■□□□□ 0.07
SKA1-205ENST00000494518 ZAP70P43403 619 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 JAG1P78504 1218 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 CCDC158Q5M9N0 1113 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 UBE2Q1Q7Z7E8 422 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 COA7Q96BR5 231 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 DEFB118Q96PH6 123 aa15.51■□□□□ 0.07
SKA1-205ENST00000494518 ASCC2Q9H1I8 757 aaPredicted RBP15.51■□□□□ 0.07
SKA1-205ENST00000494518 TLR7Q9NYK1 1049 aaKnown RBP15.51■□□□□ 0.07
SKA1-205ENST00000494518 SAP30BPQ9UHR5 308 aaKnown RBP15.51■□□□□ 0.07
SKA1-205ENST00000494518 FLT1P17948 1338 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 SGPL1O95470 568 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 BAG3O95817 575 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 MAP4K4O95819 1239 aaPredicted RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 DYNLL1P63167 89 aaKnown RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 MTMR2Q13614 643 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 FAM110CQ1W6H9 321 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 ITPRIPQ8IWB1 547 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 FTSJ3Q8IY81 847 aaKnown RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 SSH3Q8TE77 659 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 HTATIP2Q9BUP3 242 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 CCDC8Q9H0W5 538 aaPredicted RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 DNAJC18Q9H819 358 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 PIH1D3Q9NQM4 214 aaKnown RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 PI4KBQ9UBF8 816 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 HERC5Q9UII4 1024 aaKnown RBP15.5■□□□□ 0.07
SKA1-205ENST00000494518 NDUFB9Q9Y6M9 179 aa15.5■□□□□ 0.07
SKA1-205ENST00000494518 TFRCP02786 760 aaKnown RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms