RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 PRELPP51888 382 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 RBM5P52756 815 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP54-214ENST00000492357 PPP2R5BQ15173 497 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 GPR162Q16538 588 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 STOX1Q6ZVD7 989 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 C16orf86Q6ZW13 317 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 SGMS1Q86VZ5 419 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 TBC1D10CQ8IV04 446 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 FAM151AQ8WW52 585 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 ZNF274Q96GC6 653 aaPredicted RBP11.39□□□□□ -0.59
USP54-214ENST00000492357 CCDC17Q96LX7 622 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 UPF3BQ9BZI7 483 aaKnown RBP11.39□□□□□ -0.59
USP54-214ENST00000492357 NBPF3Q9H094 633 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 TCP11L1Q9NUJ3 509 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 HERC5Q9UII4 1024 aaKnown RBP11.39□□□□□ -0.59
USP54-214ENST00000492357 PPP2R3BQ9Y5P8 575 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 SCN4AP35499 1836 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 PLIN4Q96Q06 1357 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 PITPNM2Q9BZ72 1349 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 ERICH2A1L162 156 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 MINDY4BA8MYZ0 360 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 GMPSP49915 693 aaPredicted RBP11.38□□□□□ -0.59
USP54-214ENST00000492357 CUL4AQ13619 759 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 IQCA1Q86XH1 822 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 MAPKAPK5Q8IW41 473 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 RGS22Q8NE09 1264 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 MXD3Q9BW11 206 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 GPRC5DQ9NZD1 345 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 RNF181Q9P0P0 153 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 PI4KBQ9UBF8 816 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 CNOT7Q9UIV1 285 aaKnown RBP11.38□□□□□ -0.59
USP54-214ENST00000492357 SERPINB13Q9UIV8 391 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 ANGEL1Q9UNK9 670 aaKnown RBP11.38□□□□□ -0.59
USP54-214ENST00000492357 ADAMTSL1Q8N6G6 1762 aa11.38□□□□□ -0.59
USP54-214ENST00000492357 ZNF541Q9H0D2 1346 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 WNT10BO00744 389 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 PRC1O43663 620 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 TBC1D12O60347 775 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 LMOD1P29536 600 aaPredicted RBP11.37□□□□□ -0.59
USP54-214ENST00000492357 AK2P54819 239 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 HAND2P61296 217 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 FGD1P98174 961 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 GABPAQ06546 454 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 C9orf131Q5VYM1 1079 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 APOBEC3FQ8IUX4 373 aaKnown RBP11.37□□□□□ -0.59
USP54-214ENST00000492357 PRMT6Q96LA8 375 aaPredicted RBP11.37□□□□□ -0.59
USP54-214ENST00000492357 CWC22Q9HCG8 908 aaKnown RBP11.37□□□□□ -0.59
USP54-214ENST00000492357 GINM1Q9NU53 330 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 ZNF70Q9UC06 446 aaPredicted RBP11.37□□□□□ -0.59
USP54-214ENST00000492357 NID2Q14112 1375 aa11.37□□□□□ -0.59
USP54-214ENST00000492357 DHX16O60231 1041 aaKnown RBP11.36□□□□□ -0.59
USP54-214ENST00000492357 CTDSPL2Q05D32 466 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 DGKHQ86XP1 1220 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 MICALL2Q8IY33 904 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 ZC3H15Q8WU90 426 aaKnown RBP11.36□□□□□ -0.59
USP54-214ENST00000492357 ANKS1AQ92625 1134 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 MAP3K14Q99558 947 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 UBAC1Q9BSL1 405 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 ADARB2Q9NS39 739 aaKnown RBP11.36□□□□□ -0.59
USP54-214ENST00000492357 FAM198AQ9UFP1 575 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 CIZ1Q9ULV3 898 aaPredicted RBP11.36□□□□□ -0.59
USP54-214ENST00000492357 SYNPO2Q9UMS6 1093 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.36□□□□□ -0.59
USP54-214ENST00000492357 TAF6LQ9Y6J9 622 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 MYH8P13535 1937 aa11.36□□□□□ -0.59
USP54-214ENST00000492357 NEDD4P46934 1319 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 WDR90Q96KV7 1748 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 IQCA1LA6NCM1 817 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 SH2B2O14492 632 aaPredicted RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 KDM4AO75164 1064 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 CALM1P0DP23 149 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 CALM2P0DP24 149 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 CALM3P0DP25 149 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 MAP3K10Q02779 954 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 TOB2Q14106 344 aaPredicted RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 KIF4BQ2VIQ3 1234 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 Q6ZUG5 572 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 USP50Q70EL3 339 aaPredicted RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 ZNF444Q8N0Y2 327 aaPredicted RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 NEDD1Q8NHV4 660 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 TMX3Q96JJ7 454 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 LLPHQ9BRT6 129 aaKnown RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 TDRD3Q9H7E2 651 aaKnown RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 MKNK2Q9HBH9 465 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 DDX4Q9NQI0 724 aaKnown RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 ZSWIM5Q9P217 1185 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 KIF3AQ9Y496 699 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 GJA3Q9Y6H8 435 aa11.35□□□□□ -0.59
USP54-214ENST00000492357 GREB1LQ9C091 1923 aaPredicted RBP11.35□□□□□ -0.59
USP54-214ENST00000492357 GLTPD2A6NH11 291 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 B4E1Z4 1266 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 NOVP48745 357 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 CDK8P49336 464 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 ANTXR2P58335 489 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 NFIAQ12857 509 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 PICALMQ13492 652 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 TATDN1Q6P1N9 297 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 IGDCC4Q8TDY8 1250 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 BRF1Q92994 677 aa11.34□□□□□ -0.59
USP54-214ENST00000492357 ZSCAN10Q96SZ4 725 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms