RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 FAM53CQ9NYF3 392 aa8.56□□□□□ -1.04
SCN1A-206ENST00000491429 KRTAP9-7A8MTY7 169 aa8.55□□□□□ -1.04
SCN1A-206ENST00000491429 RING1Q06587 406 aa8.55□□□□□ -1.04
SCN1A-206ENST00000491429 BHLHE22Q8NFJ8 381 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-206ENST00000491429 NECAB3Q96P71 396 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-206ENST00000491429 PICK1Q9NRD5 415 aa8.55□□□□□ -1.04
SCN1A-206ENST00000491429 GNAT3A8MTJ3 354 aa8.54□□□□□ -1.04
SCN1A-206ENST00000491429 PAGE1O75459 146 aa8.54□□□□□ -1.04
SCN1A-206ENST00000491429 BMP6P22004 513 aa8.54□□□□□ -1.04
SCN1A-206ENST00000491429 ZBTB37Q5TC79 503 aa8.54□□□□□ -1.04
SCN1A-206ENST00000491429 TPTE2Q6XPS3 522 aa8.54□□□□□ -1.04
SCN1A-206ENST00000491429 ENC1O14682 589 aa8.53□□□□□ -1.04
SCN1A-206ENST00000491429 RAP1GAPP47736 663 aa8.53□□□□□ -1.04
SCN1A-206ENST00000491429 CLCN7P51798 805 aa8.53□□□□□ -1.04
SCN1A-206ENST00000491429 RASIP1Q5U651 963 aa8.53□□□□□ -1.04
SCN1A-206ENST00000491429 PNMA6FA0A0J9YX94 578 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 CFPP27918 469 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 AFMP43652 599 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 KRTAP19-4Q3LI73 84 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 PRR23BQ6ZRT6 265 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 ARMCX6Q7L4S7 300 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 CARS2Q9HA77 564 aaKnown RBP8.52□□□□□ -1.05
SCN1A-206ENST00000491429 PRDM5Q9NQX1 630 aaPredicted RBP8.52□□□□□ -1.05
SCN1A-206ENST00000491429 GTF3C3Q9Y5Q9 886 aa8.52□□□□□ -1.05
SCN1A-206ENST00000491429 PRR33A8MZF0 331 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 FANCGO15287 622 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 FBXO24O75426 580 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 TRIM37O94972 964 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 TSPAN15O95858 294 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 C1QL4Q86Z23 238 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 ATP13A1Q9HD20 1204 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 C19orf73Q9NVV2 129 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 LMCD1Q9NZU5 365 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 CNTNAP4Q9C0A0 1308 aa8.51□□□□□ -1.05
SCN1A-206ENST00000491429 GLI1P08151 1106 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 DSC3Q14574 896 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 CDC37L1Q7L3B6 337 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 KIRREL1Q96J84 757 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 HSPA12BQ96MM6 686 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 FOXQ1Q9C009 403 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 SEMA3GQ9NS98 782 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 PCDHA4Q9UN74 947 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 MAPK8IP1Q9UQF2 711 aa8.5□□□□□ -1.05
SCN1A-206ENST00000491429 SOWAHDA6NJG2 315 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 SLITRK5O94991 958 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 ENOX2Q16206 610 aaKnown RBP8.49□□□□□ -1.05
SCN1A-206ENST00000491429 LLGL2Q6P1M3 1020 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 MPZL3Q6UWV2 235 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 LCNL1Q6ZST4 164 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 SYDE1Q6ZW31 735 aaPredicted RBP8.49□□□□□ -1.05
SCN1A-206ENST00000491429 CYFIP1Q7L576 1253 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 TOX2Q96NM4 488 aa8.49□□□□□ -1.05
SCN1A-206ENST00000491429 RBAK-RBAKDNI3L0D1 243 aa8.48□□□□□ -1.05
SCN1A-206ENST00000491429 ZNF865P0CJ78 1059 aaPredicted RBP8.48□□□□□ -1.05
SCN1A-206ENST00000491429 CDKAL1Q5VV42 579 aa8.48□□□□□ -1.05
SCN1A-206ENST00000491429 LRRC56Q8IYG6 542 aaPredicted RBP8.48□□□□□ -1.05
SCN1A-206ENST00000491429 CCER1Q8TC90 406 aaPredicted RBP8.48□□□□□ -1.05
SCN1A-206ENST00000491429 PPP1R16BQ96T49 567 aa8.48□□□□□ -1.05
SCN1A-206ENST00000491429 FBRSQ9HAH7 460 aa8.48□□□□□ -1.05
SCN1A-206ENST00000491429 LRIG2O94898 1065 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 GSTT1P30711 240 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 INPP5AQ14642 412 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 TMEM67Q5HYA8 995 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 ELMO3Q96BJ8 720 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 CEP44Q9C0F1 390 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 DCTN4Q9UJW0 460 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 SAMM50Q9Y512 469 aa8.47□□□□□ -1.05
SCN1A-206ENST00000491429 FAM155AB1AL88 458 aaPredicted RBP8.46□□□□□ -1.06
SCN1A-206ENST00000491429 H3BS24 57 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 TREHO43280 583 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 KRT1P04264 644 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 PLCB3Q01970 1234 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 KCT2Q8NC54 265 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 OSBPL7Q9BZF2 842 aa8.46□□□□□ -1.06
SCN1A-206ENST00000491429 BIN2Q9UBW5 565 aaPredicted RBP8.46□□□□□ -1.06
SCN1A-206ENST00000491429 PRAMEF27A3QJZ7 478 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 C1QTNF9P0C862 333 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 FGD1P98174 961 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 PTPN11Q06124 597 aaPredicted RBP8.45□□□□□ -1.06
SCN1A-206ENST00000491429 LRFN4Q6PJG9 635 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 MFSD4AQ8N468 514 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 RETREG2Q8NC44 543 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 ZNF507Q8TCN5 953 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 SETDB2Q96T68 719 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 KRTAP4-11Q9BYQ6 195 aa8.45□□□□□ -1.06
SCN1A-206ENST00000491429 TPX2Q9ULW0 747 aaKnown RBP8.45□□□□□ -1.06
SCN1A-206ENST00000491429 CELA3AP09093 270 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 GDNFP39905 211 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 SLBPQ14493 270 aaKnown RBP eCLIP8.44□□□□□ -1.06
SCN1A-206ENST00000491429 LRRC14Q15048 493 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 ANKLE2Q86XL3 938 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 NPAS4Q8IUM7 802 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 ZSCAN18Q8TBC5 510 aaPredicted RBP8.44□□□□□ -1.06
SCN1A-206ENST00000491429 DIRC2Q96SL1 478 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 MIPEPQ99797 713 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 KCNK12Q9HB15 430 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 PPM1HQ9ULR3 514 aa8.44□□□□□ -1.06
SCN1A-206ENST00000491429 NKG7Q16617 165 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 SFRP5Q5T4F7 317 aa8.43□□□□□ -1.06
SCN1A-206ENST00000491429 PCNX4Q63HM2 1172 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms