RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PTPRAP18433 802 aa22■■□□□ 1.11
COL9A3-214ENST00000490398 DGKZQ13574 1117 aa22■■□□□ 1.11
COL9A3-214ENST00000490398 SHROOM1Q2M3G4 852 aaPredicted RBP22■■□□□ 1.11
COL9A3-214ENST00000490398 KCNH4Q9UQ05 1017 aa22■■□□□ 1.11
COL9A3-214ENST00000490398 MAGEB6P1A0A0J9YX57 407 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 ADD2P35612 726 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 CAP1Q01518 475 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 EVX2Q03828 476 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 SNAPC2Q13487 334 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 LCORLQ8N3X6 602 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 ABHD8Q96I13 439 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 ZHX2Q9Y6X8 837 aa21.99■■□□□ 1.11
COL9A3-214ENST00000490398 CTNND1O60716 968 aaKnown RBP21.98■■□□□ 1.11
COL9A3-214ENST00000490398 CETPP11597 493 aa21.98■■□□□ 1.11
COL9A3-214ENST00000490398 PI4KBQ9UBF8 816 aa21.98■■□□□ 1.11
COL9A3-214ENST00000490398 USP5P45974 858 aa21.97■■□□□ 1.11
COL9A3-214ENST00000490398 HDAC1Q13547 482 aaPredicted RBP21.97■■□□□ 1.11
COL9A3-214ENST00000490398 METTL16Q86W50 562 aaKnown RBP21.97■■□□□ 1.11
COL9A3-214ENST00000490398 ARMT1Q9H993 441 aa21.97■■□□□ 1.11
COL9A3-214ENST00000490398 PICK1Q9NRD5 415 aa21.97■■□□□ 1.11
COL9A3-214ENST00000490398 AFG3L2Q9Y4W6 797 aa21.97■■□□□ 1.11
COL9A3-214ENST00000490398 FOCADQ5VW36 1801 aa21.96■■□□□ 1.11
COL9A3-214ENST00000490398 PRKAB2O43741 272 aa21.96■■□□□ 1.11
COL9A3-214ENST00000490398 FKTNO75072 461 aa21.96■■□□□ 1.11
COL9A3-214ENST00000490398 NOM1Q5C9Z4 860 aaKnown RBP21.96■■□□□ 1.11
COL9A3-214ENST00000490398 OTUD7BQ6GQQ9 843 aa21.96■■□□□ 1.11
COL9A3-214ENST00000490398 DHX36Q9H2U1 1008 aaKnown RBP21.96■■□□□ 1.11
COL9A3-214ENST00000490398 HTTP42858 3142 aa21.95■■□□□ 1.11
COL9A3-214ENST00000490398 IGHDP01880 384 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 CAP2P40123 477 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 IRX6P78412 446 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-214ENST00000490398 TAF1CQ15572 869 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-214ENST00000490398 ANKRD45Q5TZF3 282 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 GPAT2Q6NUI2 795 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 TMED8Q6PL24 325 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-214ENST00000490398 CTU1Q7Z7A3 348 aaKnown RBP21.95■■□□□ 1.1
COL9A3-214ENST00000490398 PI4K2BQ8TCG2 481 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 SDR42E1Q8WUS8 393 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 HERC5Q9UII4 1024 aaKnown RBP21.95■■□□□ 1.1
COL9A3-214ENST00000490398 SALL3Q9BXA9 1300 aa21.95■■□□□ 1.1
COL9A3-214ENST00000490398 PLCD1P51178 756 aa21.94■■□□□ 1.1
COL9A3-214ENST00000490398 FOXP4Q8IVH2 680 aaPredicted RBP21.94■■□□□ 1.1
COL9A3-214ENST00000490398 DOCK1Q14185 1865 aa21.94■■□□□ 1.1
COL9A3-214ENST00000490398 A0A0G2JLL6 359 aaPredicted RBP21.93■■□□□ 1.1
COL9A3-214ENST00000490398 TRIM75PA6NK02 468 aa21.93■■□□□ 1.1
COL9A3-214ENST00000490398 CXCL11O14625 94 aa21.93■■□□□ 1.1
COL9A3-214ENST00000490398 MBD4O95243 580 aa21.93■■□□□ 1.1
COL9A3-214ENST00000490398 GDF11O95390 407 aa21.93■■□□□ 1.1
COL9A3-214ENST00000490398 PRRT2Q7Z6L0 340 aaPredicted RBP21.93■■□□□ 1.1
COL9A3-214ENST00000490398 PUS7LQ9H0K6 701 aaKnown RBP21.93■■□□□ 1.1
COL9A3-214ENST00000490398 SMIM22K7EJ46 135 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 CYP2D6P10635 497 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 UBE3CQ15386 1083 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 ANKRD23Q86SG2 305 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 CERS3Q8IU89 383 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 CRACR2BQ8N4Y2 399 aaPredicted RBP21.92■■□□□ 1.1
COL9A3-214ENST00000490398 CD99L2Q8TCZ2 262 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 GPATCH3Q96I76 525 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 PHIPQ8WWQ0 1821 aa21.92■■□□□ 1.1
COL9A3-214ENST00000490398 PDHXO00330 501 aa21.91■■□□□ 1.1
COL9A3-214ENST00000490398 HLA-DOAP06340 250 aa21.91■■□□□ 1.1
COL9A3-214ENST00000490398 KBTBD3Q8NAB2 608 aa21.91■■□□□ 1.1
COL9A3-214ENST00000490398 CRNKL1Q9BZJ0 848 aaKnown RBP21.91■■□□□ 1.1
COL9A3-214ENST00000490398 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.91■■□□□ 1.1
COL9A3-214ENST00000490398 ZFYVE28Q9HCC9 887 aa21.91■■□□□ 1.1
COL9A3-214ENST00000490398 DCP1AQ9NPI6 582 aaPredicted RBP21.91■■□□□ 1.1
COL9A3-214ENST00000490398 DDX60LQ5H9U9 1706 aaKnown RBP21.91■■□□□ 1.1
COL9A3-214ENST00000490398 TTC41PQ6P2S7 1318 aa21.9■■□□□ 1.1
COL9A3-214ENST00000490398 SPP2Q13103 211 aa21.9■■□□□ 1.1
COL9A3-214ENST00000490398 GADL1Q6ZQY3 521 aa21.9■■□□□ 1.1
COL9A3-214ENST00000490398 GCC1Q96CN9 775 aa21.9■■□□□ 1.1
COL9A3-214ENST00000490398 CYP2C8P10632 490 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 MX1P20591 662 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 SP3Q02447 781 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 B4GALNT3Q6L9W6 998 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 OSBP2Q969R2 916 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 ZCCHC17Q9NP64 241 aaKnown RBP21.89■■□□□ 1.09
COL9A3-214ENST00000490398 MCM9Q9NXL9 1143 aa21.89■■□□□ 1.09
COL9A3-214ENST00000490398 MYH1P12882 1939 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 ADGRA2Q96PE1 1338 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 CYP2D7A0A087X1C5 515 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 TLR2O60603 784 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 SHMT1P34896 483 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 AAMPQ13685 434 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 TREML2Q5T2D2 321 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 TATDN1Q6P1N9 297 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 SMC5Q8IY18 1101 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 ZNF280CQ8ND82 737 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 TRIM34Q9BYJ4 488 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 EHD4Q9H223 541 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 CPA4Q9UI42 421 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 ZBTB21Q9ULJ3 1066 aa21.88■■□□□ 1.09
COL9A3-214ENST00000490398 CENPFP49454 3210 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 CCDC85CA6NKD9 419 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 USP17L5A8MUK1 530 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 ECM2O94769 699 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-214ENST00000490398 POLR3DP05423 398 aaPredicted RBP21.87■■□□□ 1.09
COL9A3-214ENST00000490398 GABPAQ06546 454 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 ZSCAN25Q6NSZ9 544 aa21.87■■□□□ 1.09
COL9A3-214ENST00000490398 OTOP1Q7RTM1 612 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms