RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 AFG3L2Q9Y4W6 797 aa10.25□□□□□ -0.77
USP39-216ENST00000490193 GAKO14976 1311 aa10.25□□□□□ -0.77
USP39-216ENST00000490193 ZNF521Q96K83 1311 aa10.25□□□□□ -0.77
USP39-216ENST00000490193 ATAD5Q96QE3 1844 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 INHAP05111 366 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 LDHBP07195 334 aaKnown RBP10.24□□□□□ -0.77
USP39-216ENST00000490193 ZEB1P37275 1124 aaPredicted RBP10.24□□□□□ -0.77
USP39-216ENST00000490193 FLT3LGP49771 235 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 ZFPM1Q8IX07 1006 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 PICK1Q9NRD5 415 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 USP40Q9NVE5 1235 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 ZHX2Q9Y6X8 837 aa10.24□□□□□ -0.77
USP39-216ENST00000490193 CUL9Q8IWT3 2517 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 TNPO2O14787 897 aaKnown RBP10.23□□□□□ -0.77
USP39-216ENST00000490193 EVI5O60447 810 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 CIAO1O76071 339 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 ELNP15502 786 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 RGS3P49796 1198 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 GPR153Q6NV75 609 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 SH3BP5LQ7L8J4 393 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 GNL3LQ9NVN8 582 aaKnown RBP10.23□□□□□ -0.77
USP39-216ENST00000490193 DENND2AQ9ULE3 1009 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 AGTPBP1Q9UPW5 1226 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 PDS5AQ29RF7 1337 aaKnown RBP10.23□□□□□ -0.77
USP39-216ENST00000490193 PLXNB2O15031 1838 aa10.23□□□□□ -0.77
USP39-216ENST00000490193 SOX1O00570 391 aaPredicted RBP10.22□□□□□ -0.77
USP39-216ENST00000490193 CTNND1O60716 968 aaKnown RBP10.22□□□□□ -0.77
USP39-216ENST00000490193 BMP8BP34820 402 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 ATP2B3Q16720 1220 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 FAM110CQ1W6H9 321 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 GADL1Q6ZQY3 521 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 ZGPATQ8N5A5 531 aaKnown RBP10.22□□□□□ -0.77
USP39-216ENST00000490193 ANKLE1Q8NAG6 615 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 SMCR8Q8TEV9 937 aaPredicted RBP10.22□□□□□ -0.77
USP39-216ENST00000490193 DEFB118Q96PH6 123 aa10.22□□□□□ -0.77
USP39-216ENST00000490193 COL2A1P02458 1487 aaPredicted RBP10.22□□□□□ -0.77
USP39-216ENST00000490193 DDX60LQ5H9U9 1706 aaKnown RBP10.21□□□□□ -0.77
USP39-216ENST00000490193 UNC80Q8N2C7 3258 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 DDTLA6NHG4 134 aaPredicted RBP10.21□□□□□ -0.77
USP39-216ENST00000490193 TBC1D12O60347 775 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 TFRCP02786 760 aaKnown RBP10.21□□□□□ -0.77
USP39-216ENST00000490193 PHKA1P46020 1223 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 NECAB2Q7Z6G3 386 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 PROCA1Q8NCQ7 364 aaPredicted RBP10.21□□□□□ -0.77
USP39-216ENST00000490193 COA7Q96BR5 231 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 GDF15Q99988 308 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 CEP126Q9P2H0 1117 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 PNMA3Q9UL41 463 aa10.21□□□□□ -0.77
USP39-216ENST00000490193 LRRFIP2Q9Y608 721 aaKnown RBP10.21□□□□□ -0.77
USP39-216ENST00000490193 IL15P40933 162 aaPredicted RBP10.2□□□□□ -0.78
USP39-216ENST00000490193 ZSCAN29Q8IWY8 852 aaPredicted RBP10.2□□□□□ -0.78
USP39-216ENST00000490193 SLF2Q8IX21 1173 aa10.2□□□□□ -0.78
USP39-216ENST00000490193 SSH1Q8WYL5 1049 aa10.2□□□□□ -0.78
USP39-216ENST00000490193 LRCH3Q96II8 777 aa10.2□□□□□ -0.78
USP39-216ENST00000490193 PAWRQ96IZ0 340 aaKnown RBP10.2□□□□□ -0.78
USP39-216ENST00000490193 TBC1D2Q9BYX2 928 aa10.2□□□□□ -0.78
USP39-216ENST00000490193 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP39-216ENST00000490193 DDX4Q9NQI0 724 aaKnown RBP10.2□□□□□ -0.78
USP39-216ENST00000490193 STAP2Q9UGK3 403 aa10.2□□□□□ -0.78
USP39-216ENST00000490193 MROH7-TTC4A0A0A0MT08 1334 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 TRIM75PA6NK02 468 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 MAP4K4O95819 1239 aaPredicted RBP10.19□□□□□ -0.78
USP39-216ENST00000490193 HMGCRP04035 888 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 GCLCP48506 637 aaPredicted RBP10.19□□□□□ -0.78
USP39-216ENST00000490193 RHBDL3P58872 404 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 RASGRF1Q13972 1273 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 TREML2Q5T2D2 321 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 CCDC102BQ68D86 513 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 DZIP1Q86YF9 867 aaKnown RBP10.19□□□□□ -0.78
USP39-216ENST00000490193 ANKRD13CQ8N6S4 541 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 DIS3LQ8TF46 1054 aaKnown RBP10.19□□□□□ -0.78
USP39-216ENST00000490193 MARVELD3Q96A59 401 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 OSBPL5Q9H0X9 879 aaPredicted RBP10.19□□□□□ -0.78
USP39-216ENST00000490193 SIPA1L1O43166 1804 aa10.19□□□□□ -0.78
USP39-216ENST00000490193 RPTORQ8N122 1335 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 GPR75-ASB3A0A0A6YYF3 556 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 ANP32CO43423 234 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 UBTFL1P0CB47 393 aaPredicted RBP10.18□□□□□ -0.78
USP39-216ENST00000490193 SLURP2P0DP57 97 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 BTDP43251 543 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 PABPC4Q13310 644 aaKnown RBP eCLIP10.18□□□□□ -0.781e-7■■■□□ 14.9
USP39-216ENST00000490193 LRIT3Q3SXY7 679 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 ALDH1L2Q3SY69 923 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 SH3D19Q5HYK7 790 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 SPTY2D1Q68D10 685 aaPredicted RBP10.18□□□□□ -0.78
USP39-216ENST00000490193 SIL1Q9H173 461 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 COPRSQ9NQ92 184 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.18□□□□□ -0.78
USP39-216ENST00000490193 GJD2Q9UKL4 321 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 FOCADQ5VW36 1801 aa10.18□□□□□ -0.78
USP39-216ENST00000490193 E9PSI1 815 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 ADORA1P30542 326 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 PICALMQ13492 652 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 MAP3K21Q5TCX8 1036 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 CCDC84Q86UT8 332 aaPredicted RBP10.17□□□□□ -0.78
USP39-216ENST00000490193 ZNF280CQ8ND82 737 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 ZNF384Q8TF68 577 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 NBPF3Q9H094 633 aa10.17□□□□□ -0.78
USP39-216ENST00000490193 HMX1Q9NP08 348 aaPredicted RBP10.17□□□□□ -0.78
USP39-216ENST00000490193 MORF4L1Q9UBU8 362 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms