RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 DHX36Q9H2U1 1008 aaKnown RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 CWC22Q9HCG8 908 aaKnown RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 USP40Q9NVE5 1235 aa13.73□□□□□ -0.21
TRIM40-208ENST00000489892 MKRN1Q9UHC7 482 aaKnown RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 ZNF646O15015 1829 aaPredicted RBP13.73□□□□□ -0.21
TRIM40-208ENST00000489892 PRC1O43663 620 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 FGRP09769 529 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 EXOSC10Q01780 885 aaKnown RBP13.72□□□□□ -0.21
TRIM40-208ENST00000489892 CFAP100Q494V2 611 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 C12orf60Q5U649 245 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 FKBP1CQ5VVH2 108 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 APOBEC3HQ6NTF7 200 aaKnown RBP13.72□□□□□ -0.21
TRIM40-208ENST00000489892 STOX1Q6ZVD7 989 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 IQCA1Q86XH1 822 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 MB21D2Q8IYB1 491 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-208ENST00000489892 TMX3Q96JJ7 454 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 UBAC1Q9BSL1 405 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 MXD3Q9BW11 206 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 IDI2Q9BXS1 227 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 KCNQ5Q9NR82 932 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 TOMM22Q9NS69 142 aa13.72□□□□□ -0.21
TRIM40-208ENST00000489892 COL2A1P02458 1487 aaPredicted RBP13.72□□□□□ -0.21
TRIM40-208ENST00000489892 FOCADQ5VW36 1801 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 ENTPD3O75355 529 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 RAB3GAP1Q15042 981 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 PPP4R3BQ5MIZ7 849 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 CDC42EP5Q6NZY7 148 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 Q6ZUG5 572 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 MAPKAPK5Q8IW41 473 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 AGXT2Q9BYV1 514 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 SWAP70Q9UH65 585 aa13.71□□□□□ -0.21
TRIM40-208ENST00000489892 ANGEL1Q9UNK9 670 aaKnown RBP13.71□□□□□ -0.21
TRIM40-208ENST00000489892 BAZ2AQ9UIF9 1905 aaKnown RBP13.7□□□□□ -0.22
TRIM40-208ENST00000489892 COL4A5P29400 1685 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 SPDYE2BA6NHP3 402 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 GOLGA6L22H0YM25 854 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 DHX16O60231 1041 aaKnown RBP13.7□□□□□ -0.22
TRIM40-208ENST00000489892 WDHD1O75717 1129 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-208ENST00000489892 CD2BP2O95400 341 aaKnown RBP13.7□□□□□ -0.22
TRIM40-208ENST00000489892 SPDYE6P0CI01 402 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 LIFRP42702 1097 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 CTDSPL2Q05D32 466 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 CUL4AQ13619 759 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 CHADLQ6NUI6 762 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 SYNE3Q6ZMZ3 975 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 CLEC17AQ6ZS10 378 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 NBPF3Q9H094 633 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 EHD4Q9H223 541 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 MKNK2Q9HBH9 465 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 KIF3AQ9Y496 699 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 TAF6LQ9Y6J9 622 aa13.7□□□□□ -0.22
TRIM40-208ENST00000489892 TNRC18O15417 2968 aaPredicted RBP13.7□□□□□ -0.22
TRIM40-208ENST00000489892 SCN4AP35499 1836 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 NEDD4P46934 1319 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 IQCA1LA6NCM1 817 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 POTECB2RU33 542 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 B4E1Z4 1266 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 KDM4AO75164 1064 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 RCAN1P53805 252 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 EVCP57679 992 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 ZNF280AP59817 542 aaPredicted RBP13.69□□□□□ -0.22
TRIM40-208ENST00000489892 TNFAIP1Q13829 316 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 GPC2Q8N158 579 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 BRF1Q92994 677 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 ZNF274Q96GC6 653 aaPredicted RBP13.69□□□□□ -0.22
TRIM40-208ENST00000489892 OSBPL5Q9H0X9 879 aaPredicted RBP13.69□□□□□ -0.22
TRIM40-208ENST00000489892 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.69□□□□□ -0.22
TRIM40-208ENST00000489892 DDX60LQ5H9U9 1706 aaKnown RBP13.69□□□□□ -0.22
TRIM40-208ENST00000489892 CDK5RAP2Q96SN8 1893 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 ECM29Q5VYK3 1845 aa13.69□□□□□ -0.22
TRIM40-208ENST00000489892 H7C1D1 291 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 IFIT3O14879 490 aaKnown RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 RANBP6O60518 1105 aaKnown RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 DDNO94850 711 aaPredicted RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 CPA1P15085 419 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 TNNI2P48788 182 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 NUCB2P80303 420 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 PICALMQ13492 652 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 TOB2Q14106 344 aaPredicted RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 TMEM67Q5HYA8 995 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 RRP12Q5JTH9 1297 aaKnown RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 C16orf86Q6ZW13 317 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 ZNF444Q8N0Y2 327 aaPredicted RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 LLPHQ9BRT6 129 aaKnown RBP13.68□□□□□ -0.22
TRIM40-208ENST00000489892 TRIM34Q9BYJ4 488 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 SERPINB13Q9UIV8 391 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 MYH1P12882 1939 aa13.68□□□□□ -0.22
TRIM40-208ENST00000489892 CCDC69A6NI79 296 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 CCDC85CA6NKD9 419 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 SH2B2O14492 632 aaPredicted RBP13.67□□□□□ -0.22
TRIM40-208ENST00000489892 PPP2R5BQ15173 497 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 SPDYE2Q495Y8 402 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 CPLX2Q6PUV4 134 aaKnown RBP13.67□□□□□ -0.22
TRIM40-208ENST00000489892 NFXL1Q6ZNB6 911 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 NOL8Q76FK4 1167 aaKnown RBP13.67□□□□□ -0.22
TRIM40-208ENST00000489892 SGMS1Q86VZ5 419 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 FOXP4Q8IVH2 680 aaPredicted RBP13.67□□□□□ -0.22
TRIM40-208ENST00000489892 MYOZ2Q9NPC6 264 aa13.67□□□□□ -0.22
TRIM40-208ENST00000489892 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms