RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SELENOOQ9BVL4 669 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 JADE2Q9NQC1 790 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 GJB4Q9NTQ9 266 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 FLT4P35916 1363 aa7.05□□□□□ -1.28
VPS13D-209ENST00000487188 FRMD3A2A2Y4 597 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 ENC1O14682 589 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 PRC1O43663 620 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CASP14P31944 242 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CCT6AP40227 531 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 MATR3P43243 847 aaKnown RBP eCLIP7.04□□□□□ -1.282e-6■□□□□ 9.3
VPS13D-209ENST00000487188 ATP1A2P50993 1020 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 KIF23Q02241 960 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 IMMTQ16891 758 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 USPL1Q5W0Q7 1092 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CYP26C1Q6V0L0 522 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CCDC121Q6ZUS5 278 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 SPATS2Q86XZ4 545 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 PCMTD1Q96MG8 357 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 MYO1AQ9UBC5 1043 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 MAN1B1Q9UKM7 699 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 SYNRGQ9UMZ2 1314 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CPS1P31327 1500 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 EIF3HO15372 352 aaKnown RBP eCLIP7.04□□□□□ -1.289e-7■■■■■ 32.5
VPS13D-209ENST00000487188 TBX2Q13207 712 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 PDCLQ13371 301 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 IQCA1Q86XH1 822 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 TICAM2Q86XR7 235 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 VPS37DQ86XT2 251 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 KRI1Q8N9T8 703 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 EHBP1Q8NDI1 1231 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CCDC51Q96ER9 411 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CD248Q9HCU0 757 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 INTS13Q9NVM9 706 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 RBM28Q9NW13 759 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 SAR1BQ9Y6B6 198 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 ACEP12821 1306 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 A6NNZ2 444 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 BTBD11A6QL63 1104 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 MFAP3LO75121 409 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 PIP4K2AP48426 406 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 PDE4BQ07343 736 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 TUBB8Q3ZCM7 444 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 CCDC122Q5T0U0 273 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 WDR93Q6P2C0 686 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 KSR2Q6VAB6 950 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 USHBP1Q8N6Y0 703 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 IL17REQ8NFR9 667 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 ENOX1Q8TC92 643 aaKnown RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 RPGRIP1Q96KN7 1286 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 HINFPQ9BQA5 517 aa7.04□□□□□ -1.28
VPS13D-209ENST00000487188 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-209ENST00000487188 POLR2DO15514 142 aaKnown RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 ATP2C2O75185 946 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 SYF2O95926 243 aaKnown RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 ATP5JP18859 108 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 AARSP49588 968 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 ACTN3Q08043 901 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 METTL16Q86W50 562 aaKnown RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 DLC1Q96QB1 1528 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 ZNHIT6Q9NWK9 470 aaKnown RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 BABAM1Q9NWV8 329 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 TMEM2Q9UHN6 1383 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 NRXN3Q9Y4C0 1643 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 GOLGA6L10A6NI86 522 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 TEX33O43247 280 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 AFMP43652 599 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 PLCD1P51178 756 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 KANK3Q6NY19 840 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 DBNDD2Q9BQY9 259 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 SERTAD1Q9UHV2 236 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 A0A0U1RQJ8 604 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 KIF28PB7ZC32 967 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 PPP6R2O75170 966 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 ECM2O94769 699 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 LTKP29376 864 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 KRT9P35527 623 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 METAP2P50579 478 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 FMR1Q06787 632 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 TFCP2Q12800 502 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 SNCBQ16143 134 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 TNNI3KQ59H18 835 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 NBPF14Q5TI25 921 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 SHC4Q6S5L8 630 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 THEMISQ8N1K5 641 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 LINS1Q8NG48 757 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 CERKQ8TCT0 537 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 EHD4Q9H223 541 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 HSD3B7Q9H2F3 369 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 GPHNQ9NQX3 736 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-209ENST00000487188 SNRKQ9NRH2 765 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 FPGT-TNNI3KV9GXZ4 949 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 NWD1Q149M9 1564 aa7.03□□□□□ -1.28
VPS13D-209ENST00000487188 FOXN1O15353 648 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 NLRP6P59044 892 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 FKBP15Q5T1M5 1219 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 KRT40Q6A162 431 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 KCNV1Q6PIU1 500 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 RASGRP2Q7LDG7 609 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 AIDAQ96BJ3 306 aa7.02□□□□□ -1.28
VPS13D-209ENST00000487188 DSCC1Q9BVC3 393 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms