RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 IDH1O75874 414 aaKnown RBP13.96□□□□□ -0.17
COL3A1-206ENST00000487010 MMP1P03956 469 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 GRIN1Q05586 938 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 NR1I3Q14994 352 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 ALX1Q15699 326 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 NUTM2AQ8IVF1 878 aaPredicted RBP13.96□□□□□ -0.17
COL3A1-206ENST00000487010 ZBTB38Q8NAP3 1195 aaPredicted RBP13.96□□□□□ -0.17
COL3A1-206ENST00000487010 PARD6BQ9BYG5 372 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 SLC12A7Q9Y666 1083 aa13.96□□□□□ -0.17
COL3A1-206ENST00000487010 IFNAR1P17181 557 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 HNRNPH2P55795 449 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 SAFBQ15424 915 aaKnown RBP eCLIP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 TRMT44Q8IYL2 757 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 ZNF579Q8NAF0 562 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 MED15Q96RN5 788 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 STRBPQ96SI9 672 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 ARFGAP3Q9NP61 516 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 INCENPQ9NQS7 918 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 ZSWIM5Q9P217 1185 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 LRP6O75581 1613 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 TCRBV5S4A2TA0A5A2 114 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 IFIT3O14879 490 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 PDE6AP16499 860 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 OAS2P29728 719 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 GUCY1A2P33402 732 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 SMC1AQ14683 1233 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 LDHAL6AQ6ZMR3 332 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 DIS3L2Q8IYB7 885 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 GOLGA1Q92805 767 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 DHX58Q96C10 678 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 DESI2Q9BSY9 194 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 FOXP1Q9H334 677 aaPredicted RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 SAMSN1Q9NSI8 373 aaKnown RBP13.95□□□□□ -0.18
COL3A1-206ENST00000487010 TNS3Q68CZ2 1445 aa13.95□□□□□ -0.18
COL3A1-206ENST00000487010 TNS2Q63HR2 1409 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 NID2Q14112 1375 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 KARSQ15046 597 aaKnown RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 NKX1-1Q15270 411 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 ZNF827Q17R98 1081 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 RILPL1Q5EBL4 403 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 KANK3Q6NY19 840 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 GRAMD1CQ8IYS0 662 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 PANX2Q96RD6 677 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 WWC3Q9ULE0 1092 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 TBC1D2BQ9UPU7 963 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 CHD4Q14839 1912 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 A0A0U1RQG5 324 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 A0A1B0GTH6 734 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 AKR1B15C9JRZ8 316 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 TULP2O00295 520 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 ACTN4O43707 911 aaKnown RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 CCDC175P0C221 793 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 ITGA6P23229 1130 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 ERCC5P28715 1186 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 TXLNAP40222 546 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 PLCD1P51178 756 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 IRX5P78411 483 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 JAKMIP3Q5VZ66 844 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 TXLNBQ8N3L3 684 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 VGLL2Q8N8G2 317 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 SPATA20Q8TB22 786 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 CCDC12Q8WUD4 166 aaPredicted RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 AIDAQ96BJ3 306 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 FUT8Q9BYC5 575 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 MRPL44Q9H9J2 332 aaKnown RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 ZCCHC17Q9NP64 241 aaKnown RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 TMEM51Q9NW97 253 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 KCNJ14Q9UNX9 436 aa13.94□□□□□ -0.18
COL3A1-206ENST00000487010 SRPRBQ9Y5M8 271 aaKnown RBP13.94□□□□□ -0.18
COL3A1-206ENST00000487010 PATL2C9JE40 543 aaKnown RBP13.93□□□□□ -0.18
COL3A1-206ENST00000487010 ZBTB22O15209 634 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 ST5P78524 1137 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 CTDSPL2Q05D32 466 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 MTF1Q14872 753 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 SYNE4Q8N205 404 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 TTLL11Q8NHH1 800 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 TEX13AQ9BXU3 409 aaPredicted RBP13.93□□□□□ -0.18
COL3A1-206ENST00000487010 GREM2Q9H772 168 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 ZNF330Q9Y3S2 320 aaPredicted RBP13.93□□□□□ -0.18
COL3A1-206ENST00000487010 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 TACC3Q9Y6A5 838 aa13.93□□□□□ -0.18
COL3A1-206ENST00000487010 CDHR2Q9BYE9 1310 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 SOWAHDA6NJG2 315 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 ARID4AP29374 1257 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-206ENST00000487010 KIF6Q6ZMV9 814 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 TRIM22Q8IYM9 498 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 IFNL3Q8IZI9 196 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CCDC34Q96HJ3 373 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CNNM2Q9H8M5 875 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 EPB41L4AQ9HCS5 686 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-206ENST00000487010 SEC31BQ9NQW1 1179 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CNNM1Q9NRU3 951 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 SPATA31A3Q5VYP0 1347 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 ANKRD18BA2A2Z9 1011 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CCDC151A5D8V7 595 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 UQCRFS1P1P0C7P4 283 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 PHKA1P46020 1223 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 BRD3Q15059 726 aa13.92□□□□□ -0.18
COL3A1-206ENST00000487010 CT47A1Q5JQC4 288 aaPredicted RBP13.92□□□□□ -0.18
COL3A1-206ENST00000487010 APTXQ7Z2E3 356 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms