RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ROBO2Q9HCK4 1378 aa10□□□□□ -0.81
USP40-213ENST00000483216 DYNC1LI2O43237 492 aaPredicted RBP9.99□□□□□ -0.81
USP40-213ENST00000483216 BPNT1O95861 308 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 FAM196AQ6ZSG2 479 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 ZAR1Q86SH2 424 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 METTL16Q86W50 562 aaKnown RBP9.99□□□□□ -0.81
USP40-213ENST00000483216 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP40-213ENST00000483216 ZNF507Q8TCN5 953 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 ZNF296Q8WUU4 475 aaPredicted RBP9.99□□□□□ -0.81
USP40-213ENST00000483216 GATA6Q92908 595 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 MFSD14AQ96MC6 490 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 ADAMTS1Q9UHI8 967 aa9.99□□□□□ -0.81
USP40-213ENST00000483216 SUPT16HQ9Y5B9 1047 aaKnown RBP9.99□□□□□ -0.81
USP40-213ENST00000483216 MPP2Q14168 576 aa9.98□□□□□ -0.81
USP40-213ENST00000483216 USP48Q86UV5 1035 aa9.98□□□□□ -0.81
USP40-213ENST00000483216 GIMAP7Q8NHV1 300 aa9.98□□□□□ -0.81
USP40-213ENST00000483216 TBC1D32Q96NH3 1257 aa9.98□□□□□ -0.81
USP40-213ENST00000483216 LGR6Q9HBX8 967 aa9.98□□□□□ -0.81
USP40-213ENST00000483216 HDLBPQ00341 1268 aaKnown RBP9.97□□□□□ -0.81
USP40-213ENST00000483216 CDC37L1Q7L3B6 337 aa9.97□□□□□ -0.81
USP40-213ENST00000483216 SHKBP1Q8TBC3 707 aa9.97□□□□□ -0.81
USP40-213ENST00000483216 LRRC3Q9BY71 257 aa9.97□□□□□ -0.81
USP40-213ENST00000483216 F13BP05160 661 aa9.96□□□□□ -0.82
USP40-213ENST00000483216 ADMP35318 185 aa9.96□□□□□ -0.82
USP40-213ENST00000483216 ETF1P62495 437 aaKnown RBP9.96□□□□□ -0.82
USP40-213ENST00000483216 ZNF394Q53GI3 561 aa9.96□□□□□ -0.82
USP40-213ENST00000483216 ZDHHC13Q8IUH4 622 aa9.96□□□□□ -0.82
USP40-213ENST00000483216 PSMG3-AS1Q96PY0 264 aa9.96□□□□□ -0.82
USP40-213ENST00000483216 DDX41Q9UJV9 622 aaKnown RBP9.96□□□□□ -0.82
USP40-213ENST00000483216 GRK4P32298 578 aa9.95□□□□□ -0.82
USP40-213ENST00000483216 CAP2P40123 477 aa9.95□□□□□ -0.82
USP40-213ENST00000483216 CPSF6Q16630 551 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP40-213ENST00000483216 UBE3DQ7Z6J8 389 aa9.95□□□□□ -0.82
USP40-213ENST00000483216 FBXL6Q8N531 539 aa9.95□□□□□ -0.82
USP40-213ENST00000483216 WDR64B1ANS9 1081 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 RACK1P63244 317 aaKnown RBP9.94□□□□□ -0.82
USP40-213ENST00000483216 PDE4BQ07343 736 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 OGFOD3Q6PK18 319 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 REC114Q7Z4M0 266 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 HID1Q8IV36 788 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 SHISA5Q8N114 240 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 SPON2Q9BUD6 331 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 METTL22Q9BUU2 404 aaPredicted RBP9.94□□□□□ -0.82
USP40-213ENST00000483216 NT5C1AQ9BXI3 368 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 RNF112Q9ULX5 631 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 PCDHGB7Q9Y5F8 929 aa9.94□□□□□ -0.82
USP40-213ENST00000483216 PRR36Q9H6K5 1346 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 PRR19A6NJB7 356 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 CYP27A1Q02318 531 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 CDK5R2Q13319 367 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 NT5DC4Q86YG4 428 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 KIAA0825Q8IV33 1275 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 FBXO27Q8NI29 283 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 FBRSQ9HAH7 460 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 ATG3Q9NT62 314 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 ADAM30Q9UKF2 790 aa9.93□□□□□ -0.82
USP40-213ENST00000483216 PGRP06401 933 aa9.92□□□□□ -0.82
USP40-213ENST00000483216 SLBPQ14493 270 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP40-213ENST00000483216 CWF19L2Q2TBE0 894 aaKnown RBP9.92□□□□□ -0.82
USP40-213ENST00000483216 ZNF654Q8IZM8 581 aa9.92□□□□□ -0.82
USP40-213ENST00000483216 OSBPL1AQ9BXW6 950 aa9.92□□□□□ -0.82
USP40-213ENST00000483216 POLR3KQ9Y2Y1 108 aaPredicted RBP9.92□□□□□ -0.82
USP40-213ENST00000483216 FAM170BA6NMN3 283 aa9.91□□□□□ -0.82
USP40-213ENST00000483216 E9PSI1 815 aa9.91□□□□□ -0.82
USP40-213ENST00000483216 TLR3O15455 904 aaKnown RBP9.91□□□□□ -0.82
USP40-213ENST00000483216 LRIG2O94898 1065 aa9.91□□□□□ -0.82
USP40-213ENST00000483216 C9orf131Q5VYM1 1079 aa9.91□□□□□ -0.82
USP40-213ENST00000483216 UBP1Q9NZI7 540 aa9.91□□□□□ -0.82
USP40-213ENST00000483216 CRKP46108 304 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 NKG7Q16617 165 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 TMEM201Q5SNT2 666 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 DUSP27Q5VZP5 1158 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 ZNF765Q7L2R6 523 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 ARMCX6Q7L4S7 300 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 MRPL41Q8IXM3 137 aaKnown RBP9.9□□□□□ -0.82
USP40-213ENST00000483216 EAF1Q96JC9 268 aaPredicted RBP9.9□□□□□ -0.82
USP40-213ENST00000483216 FOXQ1Q9C009 403 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 CORINQ9Y5Q5 1042 aa9.9□□□□□ -0.82
USP40-213ENST00000483216 CST3P01034 146 aaPredicted RBP9.89□□□□□ -0.83
USP40-213ENST00000483216 TGFB1P01137 390 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 FAM87AP0C7U9 286 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 TCF3P15923 654 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 PLCG1P19174 1290 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 APOBRQ0VD83 1088 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 CYP27C1Q4G0S4 372 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 SLC6A19Q695T7 634 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 MCATQ8IVS2 390 aaKnown RBP9.89□□□□□ -0.83
USP40-213ENST00000483216 SLITRK4Q8IW52 837 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 MFSD2AQ8NA29 543 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 DUSP23Q9BVJ7 150 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 PIM2Q9P1W9 311 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 TJP2Q9UDY2 1190 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 LEMD3Q9Y2U8 911 aa9.89□□□□□ -0.83
USP40-213ENST00000483216 GRIN3BO60391 1043 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 TOP6BLQ8N6T0 577 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 NKD1Q969G9 470 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 ACSF2Q96CM8 615 aaPredicted RBP9.88□□□□□ -0.83
USP40-213ENST00000483216 TMEM87BQ96K49 555 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 TGIF2Q9GZN2 237 aa9.88□□□□□ -0.83
USP40-213ENST00000483216 BRMS1Q9HCU9 246 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms